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SynergyX: a multi-modality mutual attention network for interpretable drug synergy prediction.

Authors :
Guo, Yue
Hu, Haitao
Chen, Wenbo
Yin, Hao
Wu, Jian
Hsieh, Chang-Yu
He, Qiaojun
Cao, Ji
Source :
Briefings in Bioinformatics. Mar2024, Vol. 25 Issue 2, p1-15. 15p.
Publication Year :
2024

Abstract

Discovering effective anti-tumor drug combinations is crucial for advancing cancer therapy. Taking full account of intricate biological interactions is highly important in accurately predicting drug synergy. However, the extremely limited prior knowledge poses great challenges in developing current computational methods. To address this, we introduce SynergyX, a multi-modality mutual attention network to improve anti-tumor drug synergy prediction. It dynamically captures cross-modal interactions, allowing for the modeling of complex biological networks and drug interactions. A convolution-augmented attention structure is adopted to integrate multi-omic data in this framework effectively. Compared with other state-of-the-art models, SynergyX demonstrates superior predictive accuracy in both the General Test and Blind Test and cross-dataset validation. By exhaustively screening combinations of approved drugs, SynergyX reveals its ability to identify promising drug combination candidates for potential lung cancer treatment. Another notable advantage lies in its multidimensional interpretability. Taking Sorafenib and Vorinostat as an example, SynergyX serves as a powerful tool for uncovering drug-gene interactions and deciphering cell selectivity mechanisms. In summary, SynergyX provides an illuminating and interpretable framework, poised to catalyze the expedition of drug synergy discovery and deepen our comprehension of rational combination therapy. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
14675463
Volume :
25
Issue :
2
Database :
Academic Search Index
Journal :
Briefings in Bioinformatics
Publication Type :
Academic Journal
Accession number :
176218807
Full Text :
https://doi.org/10.1093/bib/bbae015