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PRIEST: predicting viral mutations with immune escape capability of SARS-CoV-2 using temporal evolutionary information.

Authors :
Saha, Gourab
Sawmya, Shashata
Saha, Arpita
Akil, Md Ajwad
Tasnim, Sadia
Rahman, Md Saifur
Rahman, M Sohel
Source :
Briefings in Bioinformatics. May2024, Vol. 25 Issue 3, p1-12. 12p.
Publication Year :
2024

Abstract

The dynamic evolution of the severe acute respiratory syndrome coronavirus 2 virus is primarily driven by mutations in its genetic sequence, culminating in the emergence of variants with increased capability to evade host immune responses. Accurate prediction of such mutations is fundamental in mitigating pandemic spread and developing effective control measures. This study introduces a robust and interpretable deep-learning approach called PRIEST. This innovative model leverages time-series viral sequences to foresee potential viral mutations. Our comprehensive experimental evaluations underscore PRIEST's proficiency in accurately predicting immune-evading mutations. Our work represents a substantial step in utilizing deep-learning methodologies for anticipatory viral mutation analysis and pandemic response. [ABSTRACT FROM AUTHOR]

Subjects

Subjects :
*VIRAL mutation
*SARS-CoV-2

Details

Language :
English
ISSN :
14675463
Volume :
25
Issue :
3
Database :
Academic Search Index
Journal :
Briefings in Bioinformatics
Publication Type :
Academic Journal
Accession number :
177375843
Full Text :
https://doi.org/10.1093/bib/bbae218