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Phytoconstituents of Citrus limon (Lemon) as Potential Inhibitors Against Multi Targets of SARS‐CoV‐2 by Use of Molecular Modelling and In Vitro Determination Approaches.

Authors :
Raman, Kannan
Kalirajan, Rajagopal
Islam, Fahadul
Jupudi, Srikanth
Selvaraj, Divakar
Swaminathan, Gomathi
Singh, Laliteshwar Pratap
Rana, Ritesh
Akash, Shopnil
Islam, Md. Rezaul
Nainu, Firzan
Emran, Talha Bin
Dawoud, Turki M.
Bourhia, Mohammed
Dauelbait, Musaab
Barua, Rashu
Source :
ChemistryOpen. Jun2024, p1. 19p. 13 Illustrations, 3 Charts.
Publication Year :
2024

Abstract

In the present work, phytoconstituents from <italic>Citrus limon</italic> are computationally tested against SARS‐CoV‐2 target protein such as Mpro ‐ (5R82.<italic>pdb</italic>), Spike ‐ (6YZ5.<italic>pdb</italic>) &RdRp ‐ (7BTF.<italic>pdb</italic>) for COVID‐19. Docking was done by glide model, QikProp was performed by <italic>in silico</italic> ADMET screening & Prime MM‐GB/SA modules were used to define binding energy. When compared with approved COVID‐19 drugs such as Remdesivir, Ritonavir, Lopinavir, and Hydroxychloroquine, plant‐based constituents such as Quercetin, Rutoside, Naringin, Eriocitrin, and Hesperidin. bind with significant G‐scores to the active SARS‐CoV‐2 place. The constituents Rutoside and Eriocitrin were studied in each MD simulation in 100 ns against 3 proteins 5R82.<italic>pdb</italic>, 6YZ5.<italic>pdb</italic> and 7BTF.<italic>pdb</italic>.We performed an assay with significant natural compounds from contacts and <italic>in silico</italic> results (Rutin, Eriocitrin, Naringin, Hesperidin) using 3CL protease assay kit (B.11529 Omicron variant). This kit contained 3CL inhibitor GC376 as Control. The IC50 value of the test compound was found to be Rutin −17.50 μM, Eriocitrin−37.91 μM, Naringin−39.58 μM, Hesperidine−140.20 μM, the standard inhibitory concentration of GC376 was 38.64 μM. The phytoconstituents showed important interactions with SARS‐CoV‐2 targets, and potential modifications could be beneficial for future development. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
21911363
Database :
Academic Search Index
Journal :
ChemistryOpen
Publication Type :
Academic Journal
Accession number :
177982222
Full Text :
https://doi.org/10.1002/open.202300198