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A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB.

Authors :
Rayner, Tim F
Rocca-Serra, Philippe
Spellman, Paul T
Causton, Helen C
Farne, Anna
Holloway, Ele
Irizarry, Rafael A
Junmin Liu
Maier, Donald S
Miller, Michael
Petersen, Kjell
Quackenbush, John
Sherlock, Gavin
Stoeckert Jr, Christian J
White, Joseph
Whetzel, Patricia L
Wymore, Farrell
Parkinson, Helen
Sarkans, Ugis
Ball, Catherine A
Source :
BMC Bioinformatics. 2006, Vol. 7, p489-18. 18p. 7 Diagrams, 11 Charts.
Publication Year :
2006

Abstract

Background: Sharing of microarray data within the research community has been greatly facilitated by the development of the disclosure and communication standards MIAME and MAGEML by the MGED Society. However, the complexity of the MAGE-ML format has made its use impractical for laboratories lacking dedicated bioinformatics support. Results: We propose a simple tab-delimited, spreadsheet-based format, MAGE-TAB, which will become a part of the MAGE microarray data standard and can be used for annotating and communicating microarray data in a MIAME compliant fashion. Conclusion: MAGE-TAB will enable laboratories without bioinformatics experience or support to manage, exchange and submit well-annotated microarray data in a standard format using a spreadsheet. The MAGE-TAB format is self-contained, and does not require an understanding of MAGE-ML or XML. [ABSTRACT FROM AUTHOR]

Details

Language :
English
ISSN :
14712105
Volume :
7
Database :
Academic Search Index
Journal :
BMC Bioinformatics
Publication Type :
Academic Journal
Accession number :
28833891
Full Text :
https://doi.org/10.1186/1471-2105-7-489