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TREAT: a bioinformatics tool for variant annotations and visualizations in targeted and exome sequencing data.
- Source :
-
Bioinformatics . Jan2012, Vol. 28 Issue 2, p277-278. 2p. - Publication Year :
- 2012
-
Abstract
- Summary: TREAT (Targeted RE-sequencing Annotation Tool) is a tool for facile navigation and mining of the variants from both targeted resequencing and whole exome sequencing. It provides a rich integration of publicly available as well as in-house developed annotations and visualizations for variants, variant-hosting genes and host-gene pathways.Availability and implementation: TREAT is freely available to non-commercial users as either a stand-alone annotation and visualization tool, or as a comprehensive workflow integrating sequencing alignment and variant calling. The executables, instructions and the Amazon Cloud Images of TREAT can be downloaded at the website: http://ndc.mayo.edu/mayo/research/biostat/stand-alone-packages.cfmContact: Hossain.Asif@mayo.edu; Kocher.JeanPierre@mayo.eduSupplementary information: Supplementary data are provided at Bioinformatics online. [ABSTRACT FROM PUBLISHER]
Details
- Language :
- English
- ISSN :
- 13674803
- Volume :
- 28
- Issue :
- 2
- Database :
- Academic Search Index
- Journal :
- Bioinformatics
- Publication Type :
- Academic Journal
- Accession number :
- 70438605
- Full Text :
- https://doi.org/10.1093/bioinformatics/btr612