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A combined approach for locating box H/ACA snoRNAs in the human genome.

Authors :
Eo HS
Jo KS
Lee SW
Kim CB
Kim W
Source :
Molecules and cells [Mol Cells] 2005 Aug 31; Vol. 20 (1), pp. 35-42.
Publication Year :
2005

Abstract

A novel combined method for locating box H/ACA small nucleolar RNAs (snoRNAs) is described, together with a software tool. The method adopts both a probabilistic hidden Markov model (HMM) and a minimum free energy (MFE) rule, and filters possible candidate box H/ACA snoRNAs obtained from genomic DNA sequences. With our novel method 12 known box H/ACA snoRNAs, and one strong candidate were identified in 30 nucleolar protein genomic sequences.

Details

Language :
English
ISSN :
1016-8478
Volume :
20
Issue :
1
Database :
MEDLINE
Journal :
Molecules and cells
Publication Type :
Academic Journal
Accession number :
16258239