GenoProfiler: batch processing of high-throughput capillary fingerprinting data.

Authors :: You FM
Luo MC
Gu YQ
Lazo GR
Deal K
Dvorak J
Anderson OD
Source :: Bioinformatics (Oxford, England) [Bioinformatics] 2007 Jan 15; Vol. 23 (2), pp. 240-2. Date of Electronic Publication: 2006 Oct 02.
Publication Year :: 2007
Abstract: Unlabelled: High-throughput content fingerprinting techniques employing capillary electrophoresis place new demands on the editing of fingerprint files for the downstream contig assembly program, FPC. A cross-platform software application, GenoProfiler, was developed for automated editing of sized fingerprinting profiles generated by the ABI Genetic Analyzers. The batch-processing module extracts the sized fragment information directly from the ABI raw trace files, or from data files exported from GeneMapper or other size calling software, removes the background noise and undesired fragments, and generates fragment size files compatible with the FPC software.<br />Availability: http://wheat.pw.usda.gov/PhysicalMapping/

Subjects :: Information Storage and Retrieval methods
User-Computer Interface
Algorithms
Database Management Systems
Databases, Protein
Electrophoresis, Capillary methods
Gene Expression Profiling methods
Peptide Mapping methods
Software

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