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Investigations into the role of oxacarbenium ions in glycosylation reactions by ab initio molecular dynamics.

Authors :
Ionescu AR
Whitfield DM
Zgierski MZ
Nukada T
Source :
Carbohydrate research [Carbohydr Res] 2006 Dec 29; Vol. 341 (18), pp. 2912-20. Date of Electronic Publication: 2006 Oct 12.
Publication Year :
2006

Abstract

We present a constrained ab initio molecular dynamics method that allows the modeling of the conformational interconversions of glycopyranosyl oxacarbenium ions. The model was successfully tested by estimating the barriers to ring inversion for two 4-substituted tetrahydropyranosyl oxacarbenium ions. The model was further extended to predict the pathways that connect the (4)H(3) half-chair conformation of 2,3,4,6-tetra-O-methyl-d-glucopyranosyl cation to its inverted (5)S(1) conformation and the (4)H(3) half-chair conformation of 2,3,4,6-tetra-O-methyl-d-mannopyranosyl cation to its inverted (3)E conformation. The modeled interconversion pathways reconcile a large body of experimental work on the acid-catalyzed hydrolysis of glycosides and the mechanisms of a number of glucosidases and mannosidases.

Details

Language :
English
ISSN :
0008-6215
Volume :
341
Issue :
18
Database :
MEDLINE
Journal :
Carbohydrate research
Publication Type :
Academic Journal
Accession number :
17069777
Full Text :
https://doi.org/10.1016/j.carres.2006.09.027