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Distributions of epistasis in microbes fit predictions from a fitness landscape model.
- Source :
-
Nature genetics [Nat Genet] 2007 Apr; Vol. 39 (4), pp. 555-60. Date of Electronic Publication: 2007 Mar 18. - Publication Year :
- 2007
-
Abstract
- How do the fitness effects of several mutations combine? Despite its simplicity, this question is central to the understanding of multilocus evolution. Epistasis (the interaction between alleles at different loci), especially epistasis for fitness traits such as reproduction and survival, influences evolutionary predictions "almost whenever multilocus genetics matters". Yet very few models have sought to predict epistasis, and none has been empirically tested. Here we show that the distribution of epistasis can be predicted from the distribution of single mutation effects, based on a simple fitness landscape model. We show that this prediction closely matches the empirical measures of epistasis that have been obtained for Escherichia coli and the RNA virus vesicular stomatitis virus. Our results suggest that a simple fitness landscape model may be sufficient to quantitatively capture the complex nature of gene interactions. This model may offer a simple and widely applicable alternative to complex metabolic network models, in particular for making evolutionary predictions.
- Subjects :
- Biological Evolution
Escherichia coli genetics
Escherichia coli growth & development
Likelihood Functions
Selection, Genetic
Statistical Distributions
Vesicular stomatitis Indiana virus genetics
Vesicular stomatitis Indiana virus growth & development
Adaptation, Biological genetics
Epistasis, Genetic
Genetics, Microbial
Models, Genetic
Subjects
Details
- Language :
- English
- ISSN :
- 1061-4036
- Volume :
- 39
- Issue :
- 4
- Database :
- MEDLINE
- Journal :
- Nature genetics
- Publication Type :
- Academic Journal
- Accession number :
- 17369829
- Full Text :
- https://doi.org/10.1038/ng1998