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taveRNA: a web suite for RNA algorithms and applications.
- Source :
-
Nucleic acids research [Nucleic Acids Res] 2007 Jul; Vol. 35 (Web Server issue), pp. W325-9. Date of Electronic Publication: 2007 May 08. - Publication Year :
- 2007
-
Abstract
- We present taveRNA, a web server package that hosts three RNA web services: alteRNA, inteRNA and pRuNA. alteRNA is a new alternative for RNA secondary structure prediction. It is based on a dynamic programming solution that minimizes the sum of energy density and free energy of an RNA structure. inteRNA is the first RNA-RNA interaction structure prediction web service. It also employs a dynamic programming algorithm to minimize the free energy of the resulting joint structure of the two interacting RNAs. Lastly, pRuNA is an efficient database pruning service; which given a query RNA, eliminates a significant portion of an ncRNA database and returns only a few ncRNAs as potential regulators. taveRNA is available at http://compbio.cs.sfu.ca/taverna.
Details
- Language :
- English
- ISSN :
- 1362-4962
- Volume :
- 35
- Issue :
- Web Server issue
- Database :
- MEDLINE
- Journal :
- Nucleic acids research
- Publication Type :
- Academic Journal
- Accession number :
- 17488837
- Full Text :
- https://doi.org/10.1093/nar/gkm303