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Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications.

Authors :
Yilmaz P
Kottmann R
Field D
Knight R
Cole JR
Amaral-Zettler L
Gilbert JA
Karsch-Mizrachi I
Johnston A
Cochrane G
Vaughan R
Hunter C
Park J
Morrison N
Rocca-Serra P
Sterk P
Arumugam M
Bailey M
Baumgartner L
Birren BW
Blaser MJ
Bonazzi V
Booth T
Bork P
Bushman FD
Buttigieg PL
Chain PS
Charlson E
Costello EK
Huot-Creasy H
Dawyndt P
DeSantis T
Fierer N
Fuhrman JA
Gallery RE
Gevers D
Gibbs RA
San Gil I
Gonzalez A
Gordon JI
Guralnick R
Hankeln W
Highlander S
Hugenholtz P
Jansson J
Kau AL
Kelley ST
Kennedy J
Knights D
Koren O
Kuczynski J
Kyrpides N
Larsen R
Lauber CL
Legg T
Ley RE
Lozupone CA
Ludwig W
Lyons D
Maguire E
Methé BA
Meyer F
Muegge B
Nakielny S
Nelson KE
Nemergut D
Neufeld JD
Newbold LK
Oliver AE
Pace NR
Palanisamy G
Peplies J
Petrosino J
Proctor L
Pruesse E
Quast C
Raes J
Ratnasingham S
Ravel J
Relman DA
Assunta-Sansone S
Schloss PD
Schriml L
Sinha R
Smith MI
Sodergren E
Spo A
Stombaugh J
Tiedje JM
Ward DV
Weinstock GM
Wendel D
White O
Whiteley A
Wilke A
Wortman JR
Yatsunenko T
Glöckner FO
Source :
Nature biotechnology [Nat Biotechnol] 2011 May; Vol. 29 (5), pp. 415-20.
Publication Year :
2011

Abstract

Here we present a standard developed by the Genomic Standards Consortium (GSC) for reporting marker gene sequences--the minimum information about a marker gene sequence (MIMARKS). We also introduce a system for describing the environment from which a biological sample originates. The 'environmental packages' apply to any genome sequence of known origin and can be used in combination with MIMARKS and other GSC checklists. Finally, to establish a unified standard for describing sequence data and to provide a single point of entry for the scientific community to access and learn about GSC checklists, we present the minimum information about any (x) sequence (MIxS). Adoption of MIxS will enhance our ability to analyze natural genetic diversity documented by massive DNA sequencing efforts from myriad ecosystems in our ever-changing biosphere.

Details

Language :
English
ISSN :
1546-1696
Volume :
29
Issue :
5
Database :
MEDLINE
Journal :
Nature biotechnology
Publication Type :
Academic Journal
Accession number :
21552244
Full Text :
https://doi.org/10.1038/nbt.1823