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Metalloprotein active site structure determination: synergy between X-ray absorption spectroscopy and X-ray crystallography.

Authors :
Cotelesage JJ
Pushie MJ
Grochulski P
Pickering IJ
George GN
Source :
Journal of inorganic biochemistry [J Inorg Biochem] 2012 Oct; Vol. 115, pp. 127-37. Date of Electronic Publication: 2012 Jul 06.
Publication Year :
2012

Abstract

Structures of metalloprotein active sites derived from X-ray crystallography frequently contain chemical anomalies such as unexpected atomic geometries or elongated bond-lengths. Such anomalies are expected from the known errors inherent in macromolecular crystallography (ca. 0.1-0.2Å) and from the lack of appropriate restraints for metal sites which are often without precedent in the small molecule structure literature. Here we review the potential of X-ray absorption spectroscopy to provide information and perspective which could aid in improving the accuracy of metalloprotein crystal structure solutions. We also review the potential problem areas in analysis of the extended X-ray absorption fine structure (EXAFS) and discuss the use of density functional theory as another possible source of geometrical restraints for crystal structure analysis of metalloprotein active sites.<br /> (Copyright © 2012 Elsevier Inc. All rights reserved.)

Details

Language :
English
ISSN :
1873-3344
Volume :
115
Database :
MEDLINE
Journal :
Journal of inorganic biochemistry
Publication Type :
Academic Journal
Accession number :
22824156
Full Text :
https://doi.org/10.1016/j.jinorgbio.2012.06.019