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Vibrio zhuhaiensis sp. nov., isolated from a Japanese prawn (Marsupenaeus japonicus).
- Source :
-
Antonie van Leeuwenhoek [Antonie Van Leeuwenhoek] 2013 May; Vol. 103 (5), pp. 989-96. Date of Electronic Publication: 2013 Jan 22. - Publication Year :
- 2013
-
Abstract
- A Gram-negative, oxidase-positive, facultatively anaerobic bacterium, designated strain E20121, was isolated from the digestive tract of a Japanese prawn (Marsupenaeus japonicus) collected from the coastal sea water area of Zhuhai, Guangdong province, China. The new isolate was determined to be closely related to Vibrio ponticus DSM 16217(T), having 97.6 % 16S rRNA gene sequence similarity. Phylogenetic analysis based on recA, pyrH and rpoA also showed low levels of sequence similarities (72.6-96.6 %) with all species of the genus Vibrio. A multigene phylogenetic tree using concatenated sequences of the four genes (16S rRNA, rpoA, recA and pyrH) clearly showed that the new isolate is different from the currently known Vibrio species. DNA-DNA hybridization experiments revealed similarity values below 70 % with the closest related species V. ponticus DSM 16217(T). Several phenotypic traits enabled the differentiation of strain E20121 from the closest phylogenetic neighbours. The DNA G+C content of strain E20121 was determined to be 47.6 mol % and the major fatty acid components identified were C16:1ω7c and/or C16:1ω6c (39.8 %), C18:1ω7c (13.6 %) and C16:0 (9.6 %). Based on genotypic, phenotypic, chemotaxonomic, phylogenetic and DNA-DNA hybridization analyses, strain E20121 is proposed to represent a novel species of the genus Vibrio for which the name Vibrio zhuhaiensis sp. nov. is proposed. The type strain is E20121(T)(=DSM 25602(T) = CCTCC AB 2011174(T)).
- Subjects :
- Anaerobiosis
Animals
Bacterial Typing Techniques
Base Composition
China
Cluster Analysis
DNA, Bacterial chemistry
DNA, Bacterial genetics
DNA, Ribosomal chemistry
DNA, Ribosomal genetics
DNA-Directed RNA Polymerases genetics
Digestive System microbiology
Fatty Acids analysis
Molecular Sequence Data
Nucleic Acid Hybridization
Nucleoside-Phosphate Kinase genetics
Phylogeny
RNA, Ribosomal, 16S genetics
Rec A Recombinases genetics
Sequence Analysis, DNA
Vibrio genetics
Vibrio physiology
Penaeidae microbiology
Vibrio classification
Vibrio isolation & purification
Subjects
Details
- Language :
- English
- ISSN :
- 1572-9699
- Volume :
- 103
- Issue :
- 5
- Database :
- MEDLINE
- Journal :
- Antonie van Leeuwenhoek
- Publication Type :
- Academic Journal
- Accession number :
- 23338602
- Full Text :
- https://doi.org/10.1007/s10482-013-9878-4