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Identifying radiation exposure biomarkers from mouse blood transcriptome.

Authors :
Hyduke DR
Laiakis EC
Li HH
Fornace AJ Jr
Source :
International journal of bioinformatics research and applications [Int J Bioinform Res Appl] 2013; Vol. 9 (4), pp. 365-85.
Publication Year :
2013

Abstract

Ionising radiation is a pleiotropic stress agent that may induce a variety of adverse effects. Molecular biomarker approaches possess promise to assess radiation exposure, however, the pleiotropic nature of ionising radiation induced transcriptional responses and the historically poor inter-laboratory performance of omics-derived biomarkers serve as barriers to identification of unequivocal biomarker sets. Here, we present a whole-genome survey of the murine transcriptomic response to physiologically relevant radiation doses, 2 Gy and 8 Gy. We used this dataset with the Random Forest algorithm to correctly classify independently generated data and to identify putative metabolite biomarkers for radiation exposure.

Details

Language :
English
ISSN :
1744-5485
Volume :
9
Issue :
4
Database :
MEDLINE
Journal :
International journal of bioinformatics research and applications
Publication Type :
Academic Journal
Accession number :
23797995
Full Text :
https://doi.org/10.1504/IJBRA.2013.054701