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A C library for retrieving specific reactions from the BioModels database.

Authors :
Neal ML
Galdzicki M
Gallimore JT
Sauro HM
Source :
Bioinformatics (Oxford, England) [Bioinformatics] 2014 Jan 01; Vol. 30 (1), pp. 129-30. Date of Electronic Publication: 2013 Sep 29.
Publication Year :
2014

Abstract

Summary: We describe libSBMLReactionFinder, a C library for retrieving specific biochemical reactions from the curated systems biology markup language models contained in the BioModels database. The library leverages semantic annotations in the database to associate reactions with human-readable descriptions, making the reactions retrievable through simple string searches. Our goal is to provide a useful tool for quantitative modelers who seek to accelerate modeling efforts through the reuse of previously published representations of specific chemical reactions.<br />Availability and Implementation: The library is open-source and dual licensed under the Mozilla Public License Version 2.0 and GNU General Public License Version 2.0. Project source code, downloads and documentation are available at http://code.google.com/p/lib-sbml-reaction-finder.

Details

Language :
English
ISSN :
1367-4811
Volume :
30
Issue :
1
Database :
MEDLINE
Journal :
Bioinformatics (Oxford, England)
Publication Type :
Academic Journal
Accession number :
24078714
Full Text :
https://doi.org/10.1093/bioinformatics/btt567