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A multiple time step scheme for multiresolved models of macromolecules.

Authors :
Di Pasquale N
Gowers RJ
Carbone P
Source :
Journal of computational chemistry [J Comput Chem] 2014 Jun 15; Vol. 35 (16), pp. 1199-207. Date of Electronic Publication: 2014 Mar 26.
Publication Year :
2014

Abstract

In hybrid particle models where coarse-grained beads and atoms are used simultaneously, two clearly separate time scales are mixed. If such models are used in molecular dynamics simulations, a multiple time step (MTS) scheme can therefore be used. In this manuscript, we propose a simple MTS algorithm which approximates for a specific number of integration steps the slow coarse-grained bead-bead interactions with a Taylor series approximation while the atom-atom ones are integrated every time step. The procedure is applied to a previously developed hybrid model of a melt of atactic polystyrene (di Pasquale, Marchisio, and Carbone, J. Chem. Phys. 2012, 137, 164111). The results show that structure, local dynamics, and free diffusion of the model are not altered by the application of the integration scheme which can confidently be used to simulate multiresolved models of polymer melts.<br /> (Copyright © 2014 Wiley Periodicals, Inc.)

Details

Language :
English
ISSN :
1096-987X
Volume :
35
Issue :
16
Database :
MEDLINE
Journal :
Journal of computational chemistry
Publication Type :
Academic Journal
Accession number :
24676734
Full Text :
https://doi.org/10.1002/jcc.23594