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Genome-wide association study identifies five new susceptibility loci for primary angle closure glaucoma.

Authors :
Khor CC
Do T
Jia H
Nakano M
George R
Abu-Amero K
Duvesh R
Chen LJ
Li Z
Nongpiur ME
Perera SA
Qiao C
Wong HT
Sakai H
Barbosa de Melo M
Lee MC
Chan AS
Azhany Y
Dao TL
Ikeda Y
Perez-Grossmann RA
Zarnowski T
Day AC
Jonas JB
Tam PO
Tran TA
Ayub H
Akhtar F
Micheal S
Chew PT
Aljasim LA
Dada T
Luu TT
Awadalla MS
Kitnarong N
Wanichwecharungruang B
Aung YY
Mohamed-Noor J
Vijayan S
Sarangapani S
Husain R
Jap A
Baskaran M
Goh D
Su DH
Wang H
Yong VK
Yip LW
Trinh TB
Makornwattana M
Nguyen TT
Leuenberger EU
Park KH
Wiyogo WA
Kumar RS
Tello C
Kurimoto Y
Thapa SS
Pathanapitoon K
Salmon JF
Sohn YH
Fea A
Ozaki M
Lai JS
Tantisevi V
Khaing CC
Mizoguchi T
Nakano S
Kim CY
Tang G
Fan S
Wu R
Meng H
Nguyen TT
Tran TD
Ueno M
Martinez JM
Ramli N
Aung YM
Reyes RD
Vernon SA
Fang SK
Xie Z
Chen XY
Foo JN
Sim KS
Wong TT
Quek DT
Venkatesh R
Kavitha S
Krishnadas SR
Soumittra N
Shantha B
Lim BA
Ogle J
de Vasconcellos JP
Costa VP
Abe RY
de Souza BB
Sng CC
Aquino MC
Kosior-Jarecka E
Fong GB
Tamanaja VC
Fujita R
Jiang Y
Waseem N
Low S
Pham HN
Al-Shahwan S
Craven ER
Khan MI
Dada R
Mohanty K
Faiq MA
Hewitt AW
Burdon KP
Gan EH
Prutthipongsit A
Patthanathamrongkasem T
Catacutan MA
Felarca IR
Liao CS
Rusmayani E
Istiantoro VW
Consolandi G
Pignata G
Lavia C
Rojanapongpun P
Mangkornkanokpong L
Chansangpetch S
Chan JC
Choy BN
Shum JW
Than HM
Oo KT
Han AT
Yong VH
Ng XY
Goh SR
Chong YF
Hibberd ML
Seielstad M
Png E
Dunstan SJ
Chau NV
Bei J
Zeng YX
Karkey A
Basnyat B
Pasutto F
Paoli D
Frezzotti P
Wang JJ
Mitchell P
Fingert JH
Allingham RR
Hauser MA
Lim ST
Chew SH
Ebstein RP
Sakuntabhai A
Park KH
Ahn J
Boland G
Snippe H
Stead R
Quino R
Zaw SN
Lukasik U
Shetty R
Zahari M
Bae HW
Oo NL
Kubota T
Manassakorn A
Ho WL
Dallorto L
Hwang YH
Kiire CA
Kuroda M
Djamal ZE
Peregrino JI
Ghosh A
Jeoung JW
Hoan TS
Srisamran N
Sandragasu T
Set SH
Doan VH
Bhattacharya SS
Ho CL
Tan DT
Sihota R
Loon SC
Mori K
Kinoshita S
Hollander AI
Qamar R
Wang YX
Teo YY
Tai ES
Hartleben-Matkin C
Lozano-Giral D
Saw SM
Cheng CY
Zenteno JC
Pang CP
Bui HT
Hee O
Craig JE
Edward DP
Yonahara M
Neto JM
Guevara-Fujita ML
Xu L
Ritch R
Liza-Sharmini AT
Wong TY
Al-Obeidan S
Do NH
Sundaresan P
Tham CC
Foster PJ
Vijaya L
Tashiro K
Vithana EN
Wang N
Aung T
Source :
Nature genetics [Nat Genet] 2016 May; Vol. 48 (5), pp. 556-62. Date of Electronic Publication: 2016 Apr 04.
Publication Year :
2016

Abstract

Primary angle closure glaucoma (PACG) is a major cause of blindness worldwide. We conducted a genome-wide association study (GWAS) followed by replication in a combined total of 10,503 PACG cases and 29,567 controls drawn from 24 countries across Asia, Australia, Europe, North America, and South America. We observed significant evidence of disease association at five new genetic loci upon meta-analysis of all patient collections. These loci are at EPDR1 rs3816415 (odds ratio (OR) = 1.24, P = 5.94 × 10(-15)), CHAT rs1258267 (OR = 1.22, P = 2.85 × 10(-16)), GLIS3 rs736893 (OR = 1.18, P = 1.43 × 10(-14)), FERMT2 rs7494379 (OR = 1.14, P = 3.43 × 10(-11)), and DPM2-FAM102A rs3739821 (OR = 1.15, P = 8.32 × 10(-12)). We also confirmed significant association at three previously described loci (P < 5 × 10(-8) for each sentinel SNP at PLEKHA7, COL11A1, and PCMTD1-ST18), providing new insights into the biology of PACG.

Details

Language :
English
ISSN :
1546-1718
Volume :
48
Issue :
5
Database :
MEDLINE
Journal :
Nature genetics
Publication Type :
Academic Journal
Accession number :
27064256
Full Text :
https://doi.org/10.1038/ng.3540