Back to Search
Start Over
Herbidospora soli sp. nov., isolated from soil.
- Source :
-
International journal of systematic and evolutionary microbiology [Int J Syst Evol Microbiol] 2018 Jan; Vol. 68 (1), pp. 294-298. Date of Electronic Publication: 2017 Nov 21. - Publication Year :
- 2018
-
Abstract
- A novel actinomycete strain PS42-9 <superscript>T</superscript> , which formed short chains of spores borne on the tip of long sporophores arising from the substrate mycelium, was isolated from soil in Phu-Sang National Park, Phayao province, Thailand. The isolate contained meso-diaminopimelic acid in the cell-wall peptidoglycan. The whole-cell sugars of strain PS42-9 <superscript>T</superscript> were glucose, madurose, mannose, rhamnose and ribose. The characteristic phospholipids were phosphatidylethanolamine, phosphatidylmethylethanolamine, hydroxyphosphatidylethanolamine and ninhydrin-positive glycophospholipids. The major menaquinone was MK-10(H4). The main cellular fatty acids were C17 : 1ω8c and C17 : 0. The G+C content of the genomic DNA was 71.5 mol%. Phylogenetic analysis using 16S rRNA gene sequences revealed that strain PS42-9 <superscript>T</superscript> should be classified in the genus Herbidospora and was closely related to Herbidospora sakaeratensis DMKUA 205 <superscript>T</superscript> (99.10 %) and Herbidospora yilanensis NBRC 106371 <superscript>T</superscript> (98.61 %). The result of DNA-DNA hybridization and some physiological and biochemical properties indicated that strain PS42-9 <superscript>T</superscript> could be readily distinguished from its closest phylogenetic relatives. On the basis of these phenotypic and genotypic data, this strain represents a novel species, for which the name Herbidospora soli sp. nov. is proposed. The type strain is PS42-9 <superscript>T</superscript> (=BCC 46909 <superscript>T</superscript> =NBRC 108780 <superscript>T</superscript> ).
- Subjects :
- Actinobacteria genetics
Actinobacteria isolation & purification
Bacterial Typing Techniques
Base Composition
Cell Wall chemistry
DNA, Bacterial genetics
Diaminopimelic Acid chemistry
Fatty Acids chemistry
Nucleic Acid Hybridization
Peptidoglycan chemistry
Phospholipids chemistry
RNA, Ribosomal, 16S genetics
Sequence Analysis, DNA
Thailand
Ubiquinone chemistry
Actinobacteria classification
Phylogeny
Soil Microbiology
Subjects
Details
- Language :
- English
- ISSN :
- 1466-5034
- Volume :
- 68
- Issue :
- 1
- Database :
- MEDLINE
- Journal :
- International journal of systematic and evolutionary microbiology
- Publication Type :
- Academic Journal
- Accession number :
- 29160198
- Full Text :
- https://doi.org/10.1099/ijsem.0.002503