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Fast evaluation of protein dynamics from deficient 15 N relaxation data.

Authors :
Jaremko Ł
Jaremko M
Ejchart A
Nowakowski M
Source :
Journal of biomolecular NMR [J Biomol NMR] 2018 Apr; Vol. 70 (4), pp. 219-228. Date of Electronic Publication: 2018 Mar 28.
Publication Year :
2018

Abstract

Simple and convenient method of protein dynamics evaluation from the insufficient experimental <superscript>15</superscript> N relaxation data is presented basing on the ratios, products, and differences of longitudinal and transverse <superscript>15</superscript> N relaxation rates obtained at a single magnetic field. Firstly, the proposed approach allows evaluating overall tumbling correlation time (nanosecond time scale). Next, local parameters of the model-free approach characterizing local mobility of backbone amide N-H vectors on two different time scales, S <superscript>2</superscript> and R <subscript>ex</subscript> , can be elucidated. The generalized order parameter, S <superscript>2</superscript> , describes motions on the time scale faster than the overall tumbling correlation time (pico- to nanoseconds), while the chemical exchange term, R <subscript>ex</subscript> , identifies processes slower than the overall tumbling correlation time (micro- to milliseconds). Advantages and disadvantages of different methods of data handling are thoroughly discussed.

Details

Language :
English
ISSN :
1573-5001
Volume :
70
Issue :
4
Database :
MEDLINE
Journal :
Journal of biomolecular NMR
Publication Type :
Academic Journal
Accession number :
29594733
Full Text :
https://doi.org/10.1007/s10858-018-0176-3