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Multiethnic meta-analysis identifies ancestry-specific and cross-ancestry loci for pulmonary function.

Authors :
Wyss AB
Sofer T
Lee MK
Terzikhan N
Nguyen JN
Lahousse L
Latourelle JC
Smith AV
Bartz TM
Feitosa MF
Gao W
Ahluwalia TS
Tang W
Oldmeadow C
Duan Q
de Jong K
Wojczynski MK
Wang XQ
Noordam R
Hartwig FP
Jackson VE
Wang T
Obeidat M
Hobbs BD
Huan T
Gui H
Parker MM
Hu D
Mogil LS
Kichaev G
Jin J
Graff M
Harris TB
Kalhan R
Heckbert SR
Paternoster L
Burkart KM
Liu Y
Holliday EG
Wilson JG
Vonk JM
Sanders JL
Barr RG
de Mutsert R
Menezes AMB
Adams HHH
van den Berge M
Joehanes R
Levin AM
Liberto J
Launer LJ
Morrison AC
Sitlani CM
Celedón JC
Kritchevsky SB
Scott RJ
Christensen K
Rotter JI
Bonten TN
Wehrmeister FC
Bossé Y
Xiao S
Oh S
Franceschini N
Brody JA
Kaplan RC
Lohman K
McEvoy M
Province MA
Rosendaal FR
Taylor KD
Nickle DC
Williams LK
Burchard EG
Wheeler HE
Sin DD
Gudnason V
North KE
Fornage M
Psaty BM
Myers RH
O'Connor G
Hansen T
Laurie CC
Cassano PA
Sung J
Kim WJ
Attia JR
Lange L
Boezen HM
Thyagarajan B
Rich SS
Mook-Kanamori DO
Horta BL
Uitterlinden AG
Im HK
Cho MH
Brusselle GG
Gharib SA
Dupuis J
Manichaikul A
London SJ
Source :
Nature communications [Nat Commun] 2018 Jul 30; Vol. 9 (1), pp. 2976. Date of Electronic Publication: 2018 Jul 30.
Publication Year :
2018

Abstract

Nearly 100 loci have been identified for pulmonary function, almost exclusively in studies of European ancestry populations. We extend previous research by meta-analyzing genome-wide association studies of 1000 Genomes imputed variants in relation to pulmonary function in a multiethnic population of 90,715 individuals of European (N = 60,552), African (N = 8429), Asian (N = 9959), and Hispanic/Latino (N = 11,775) ethnicities. We identify over 50 additional loci at genome-wide significance in ancestry-specific or multiethnic meta-analyses. Using recent fine-mapping methods incorporating functional annotation, gene expression, and differences in linkage disequilibrium between ethnicities, we further shed light on potential causal variants and genes at known and newly identified loci. Several of the novel genes encode proteins with predicted or established drug targets, including KCNK2 and CDK12. Our study highlights the utility of multiethnic and integrative genomics approaches to extend existing knowledge of the genetics of lung function and clinical relevance of implicated loci.

Details

Language :
English
ISSN :
2041-1723
Volume :
9
Issue :
1
Database :
MEDLINE
Journal :
Nature communications
Publication Type :
Academic Journal
Accession number :
30061609
Full Text :
https://doi.org/10.1038/s41467-018-05369-0