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Indioceanicola profundi gen. nov., sp. nov., isolated from Indian Ocean sediment.
- Source :
-
International journal of systematic and evolutionary microbiology [Int J Syst Evol Microbiol] 2018 Dec; Vol. 68 (12), pp. 3707-3712. Date of Electronic Publication: 2018 Oct 11. - Publication Year :
- 2018
-
Abstract
- A novel basophilic bacterial strain, designated as SCSIO 08040 <superscript>T</superscript> , was recovered from a deep-sea sediment sample collected from the Indian Ocean. The strain was Gram-stain-negative, vibrioid or spiral, light pink, 0.6-1.0 µm wide and 1.0-2.5 µm long. Growth occurred at 20-45 °C, pH 7-11 and <5 % (w/v) NaCl, with optimum growth at 28-37 °C, pH 7 and 0-3 % (w/v) NaCl. Catalase-, oxidase and urease-positive, nitrate reduction-negative. Analysis of 16S rRNA gene sequencing revealed that strain SCSIO 08040 <superscript>T</superscript> had the highest similarity of 95.3 % to Rhodocista pekingensis 3-p <superscript>T</superscript> . Phylogenetic analysis based on nearly complete 16S rRNA gene sequences showed that the novel isolate formed a distinct phylogenetic lineage in the family Rhodospirillaceae. The whole-cell hydrolysate contained meso-diaminopimelic acid, galactose, mannose and xylose. The total cellular fatty acid profile was dominated by C18:1ω7c and C19:0cycloω8c. Q-10 was the predominant ubiquinone. The major phospholipids were diphosphatidylglycerol, phosphatidylcholine and phosphatidylethanolamine. The DNA G+C content of strain SCSIO 08040 <superscript>T</superscript> was 66.82 mol%. Based on these polyphasic data, a new genus, Indioceanicola gen. nov., is proposed in the family Rhodospirillaceae with the type species Indioceanicola profundi sp. nov. and the type strain SCSIO 08040 <superscript>T</superscript> (=DSM 105146 <superscript>T</superscript> =CGMCC 1.15812 <superscript>T</superscript> ).
- Subjects :
- Bacterial Typing Techniques
Base Composition
DNA, Bacterial genetics
Fatty Acids chemistry
Indian Ocean
Phospholipids chemistry
Pigmentation
RNA, Ribosomal, 16S genetics
Rhodospirillaceae genetics
Rhodospirillaceae isolation & purification
Sequence Analysis, DNA
Ubiquinone analogs & derivatives
Ubiquinone chemistry
Geologic Sediments microbiology
Phylogeny
Rhodospirillaceae classification
Seawater microbiology
Subjects
Details
- Language :
- English
- ISSN :
- 1466-5034
- Volume :
- 68
- Issue :
- 12
- Database :
- MEDLINE
- Journal :
- International journal of systematic and evolutionary microbiology
- Publication Type :
- Academic Journal
- Accession number :
- 30307384
- Full Text :
- https://doi.org/10.1099/ijsem.0.003016