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Enabling precision medicine in neonatology, an integrated repository for preterm birth research.

Authors :
Sirota M
Thomas CG
Liu R
Zuhl M
Banerjee P
Wong RJ
Quaintance CC
Leite R
Chubiz J
Anderson R
Chappell J
Kim M
Grobman W
Zhang G
Rokas A
England SK
Parry S
Shaw GM
Simpson JL
Thomson E
Butte AJ
Source :
Scientific data [Sci Data] 2018 Nov 06; Vol. 5, pp. 180219. Date of Electronic Publication: 2018 Nov 06.
Publication Year :
2018

Abstract

Preterm birth, or the delivery of an infant prior to 37 weeks of gestation, is a significant cause of infant morbidity and mortality. In the last decade, the advent and continued development of molecular profiling technologies has enabled researchers to generate vast amount of 'omics' data, which together with integrative computational approaches, can help refine the current knowledge about disease mechanisms, diagnostics, and therapeutics. Here we describe the March of Dimes' Database for Preterm Birth Research (http://www.immport.org/resources/mod), a unique resource that contains a variety of 'omics' datasets related to preterm birth. The database is open publicly, and as of January 2018, links 13 molecular studies with data across tens of thousands of patients from 6 measurement modalities. The data in the repository are highly diverse and include genomic, transcriptomic, immunological, and microbiome data. Relevant datasets are augmented with additional molecular characterizations of almost 25,000 biological samples from public databases. We believe our data-sharing efforts will lead to enhanced research collaborations and coordination accelerating the overall pace of discovery in preterm birth research.

Details

Language :
English
ISSN :
2052-4463
Volume :
5
Database :
MEDLINE
Journal :
Scientific data
Publication Type :
Academic Journal
Accession number :
30398470
Full Text :
https://doi.org/10.1038/sdata.2018.219