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Staphylospora marina gen. nov., sp. nov., a novel member of the family Thermoactinomycetaceae, isolated from a deep-sea hydrothermal vent in the Pacific Ocean.
- Source :
-
International journal of systematic and evolutionary microbiology [Int J Syst Evol Microbiol] 2019 May; Vol. 69 (5), pp. 1452-1458. Date of Electronic Publication: 2019 Mar 18. - Publication Year :
- 2019
-
Abstract
- A novel bacterium, designated SCSIO 07575 <superscript>T</superscript> , was isolated from a deep-sea hydrothermal sediment sample collected from the western Pacific Ocean. Growth at 65 °C was observed, but not at 70 <superscript> </superscript> °C or below 37 °C. The optimum conditions for growth were at 55-65 °C, pH 7.0 and in the presence of 2 % (w/v) NaCl. Strain SCSIO 07575 <superscript>T</superscript> showed filamentous growth. Unstable formation of white aerial mycelia was observed, which disappeared after several times' subculture. Abundant substrate mycelia were observed with grape-like spores. No soluble pigment was observed. Phylogenetic analysis of 16S rRNA gene sequences showed that SCSIO 07575 <superscript>T</superscript> belonged to the family Thermoactinomycetaceae and formed a distinct clade in the phylogenetic tree. The cell-wall peptidoglycan contained meso-diaminopimelic acid. Whole-cell hydrolysates contained ribose, xylose, glucose and galactose. The polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, an unidentified aminophospholipid and two unidentified phospholipids. The predominant menaquinone was MK-7. Major fatty acids were iso-C15 : 0, iso-C17 : 0 and iso-C16 : 0. Based on the whole genome sequence analysis, the genome size was 2 751 094 bp with a DNA G+C value of 57.2 mol%, including one circular chromosome and one plasmid. On the basis of polyphasic data, strain SCSIO 07575 <superscript>T</superscript> represented a novel species of a new genus within the family Thermoactinomycetaceae, for which the name Staphylospora gen. nov. is proposed with the type species Staphylospora marina sp. nov. and the type strain SCSIO 07575 <superscript>T</superscript> (=DSM 106793 <superscript>T</superscript> =CGMCC 1.15879 <superscript>T</superscript> ).
- Subjects :
- Bacillales isolation & purification
Bacterial Typing Techniques
Base Composition
DNA, Bacterial genetics
Diaminopimelic Acid chemistry
Fatty Acids chemistry
Pacific Ocean
Peptidoglycan chemistry
Phospholipids chemistry
RNA, Ribosomal, 16S genetics
Sequence Analysis, DNA
Vitamin K 2 analogs & derivatives
Vitamin K 2 chemistry
Bacillales classification
Hydrothermal Vents microbiology
Phylogeny
Subjects
Details
- Language :
- English
- ISSN :
- 1466-5034
- Volume :
- 69
- Issue :
- 5
- Database :
- MEDLINE
- Journal :
- International journal of systematic and evolutionary microbiology
- Publication Type :
- Academic Journal
- Accession number :
- 30882294
- Full Text :
- https://doi.org/10.1099/ijsem.0.003339