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Association analyses identify 31 new risk loci for colorectal cancer susceptibility.

Authors :
Law PJ
Timofeeva M
Fernandez-Rozadilla C
Broderick P
Studd J
Fernandez-Tajes J
Farrington S
Svinti V
Palles C
Orlando G
Sud A
Holroyd A
Penegar S
Theodoratou E
Vaughan-Shaw P
Campbell H
Zgaga L
Hayward C
Campbell A
Harris S
Deary IJ
Starr J
Gatcombe L
Pinna M
Briggs S
Martin L
Jaeger E
Sharma-Oates A
East J
Leedham S
Arnold R
Johnstone E
Wang H
Kerr D
Kerr R
Maughan T
Kaplan R
Al-Tassan N
Palin K
Hänninen UA
Cajuso T
Tanskanen T
Kondelin J
Kaasinen E
Sarin AP
Eriksson JG
Rissanen H
Knekt P
Pukkala E
Jousilahti P
Salomaa V
Ripatti S
Palotie A
Renkonen-Sinisalo L
Lepistö A
Böhm J
Mecklin JP
Buchanan DD
Win AK
Hopper J
Jenkins ME
Lindor NM
Newcomb PA
Gallinger S
Duggan D
Casey G
Hoffmann P
Nöthen MM
Jöckel KH
Easton DF
Pharoah PDP
Peto J
Canzian F
Swerdlow A
Eeles RA
Kote-Jarai Z
Muir K
Pashayan N
Harkin A
Allan K
McQueen J
Paul J
Iveson T
Saunders M
Butterbach K
Chang-Claude J
Hoffmeister M
Brenner H
Kirac I
Matošević P
Hofer P
Brezina S
Gsur A
Cheadle JP
Aaltonen LA
Tomlinson I
Houlston RS
Dunlop MG
Source :
Nature communications [Nat Commun] 2019 May 14; Vol. 10 (1), pp. 2154. Date of Electronic Publication: 2019 May 14.
Publication Year :
2019

Abstract

Colorectal cancer (CRC) is a leading cause of cancer-related death worldwide, and has a strong heritable basis. We report a genome-wide association analysis of 34,627 CRC cases and 71,379 controls of European ancestry that identifies SNPs at 31 new CRC risk loci. We also identify eight independent risk SNPs at the new and previously reported European CRC loci, and a further nine CRC SNPs at loci previously only identified in Asian populations. We use in situ promoter capture Hi-C (CHi-C), gene expression, and in silico annotation methods to identify likely target genes of CRC SNPs. Whilst these new SNP associations implicate target genes that are enriched for known CRC pathways such as Wnt and BMP, they also highlight novel pathways with no prior links to colorectal tumourigenesis. These findings provide further insight into CRC susceptibility and enhance the prospects of applying genetic risk scores to personalised screening and prevention.

Details

Language :
English
ISSN :
2041-1723
Volume :
10
Issue :
1
Database :
MEDLINE
Journal :
Nature communications
Publication Type :
Academic Journal
Accession number :
31089142
Full Text :
https://doi.org/10.1038/s41467-019-09775-w