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Streptomyces altiplanensis sp. nov., an alkalitolerant species isolated from Chilean Altiplano soil, and emended description of Streptomyces chryseus (Krasil'nikov et al. 1965) Pridham 1970.
- Source :
-
International journal of systematic and evolutionary microbiology [Int J Syst Evol Microbiol] 2019 Aug; Vol. 69 (8), pp. 2498-2505. Date of Electronic Publication: 2019 Jun 17. - Publication Year :
- 2019
-
Abstract
- A polyphasic approach was used for evaluating the taxonomic status of strain HST21 <superscript>T</superscript> isolated from Salar de Huasco in the Atacama Desert. The results of 16S rRNA gene and multilocus sequence phylogenetic analyses assigned strain HST21 <superscript>T</superscript> to the genus Streptomyceswith Streptomyces albidochromogenes DSM 41800 <superscript>T</superscript> and Streptomyces flavidovirens DSM 40150 <superscript>T</superscript> as its nearest neighbours. Digital DNA-DNA hydridization (dDDH) and average nucleotide identity (ANI) values between the genome sequences of strain HST21 <superscript>T</superscript> and S. albidochromogenes DSM 41800 <superscript>T</superscript> (35.6 and 88.2 %) and S. flavidovirens DSM 40105 <superscript>T</superscript> (47.2 and 88.8 %) were below the thresholds of 70 and 95-96 % for prokaryotic conspecific assignation. Phenotypic, chemotaxonomic and genetic results distinguished strain HST21 <superscript>T</superscript> from its closest neighbours. Strain HST21 <superscript>T</superscript> is characterized by the presence of ll-diaminopimelic acid in its peptidoglycan layer; glucose and ribose as whole cell sugars; diphosphatidylglycerol, phosphatidylmethylethanolamine, phosphatidylethanolamine, phosphatidylinositol, glycophospholipids, unknown lipids and phospholipids as polar lipids; and anteiso-C15 : 0 (21.6 %) and anteiso-C17 : 0 (20.5 %) as major fatty acids (>15 %). Based on these results, strain HST21 <superscript>T</superscript> merits recognition as a novel species, for which the name Streptomyces altiplanensis sp. nov. is proposed. The type strain is HST21 <superscript>T</superscript> =DSM 107267 <superscript>T</superscript> =CECT 9647 <superscript>T</superscript> . While analysing the phylogenies of strain HST21 <superscript>T</superscript> , Streptomyces chryseus DSM 40420 <superscript>T</superscript> and Streptomyces helvaticus DSM 40431 <superscript>T</superscript> were found to have 100 % 16S rRNA gene sequence similarity with digital DNA-DNA hydridization (dDDH) and average nucleotide identity (ANI) values of 95.3 and 99.4 %, respectively. Therefore, S. helvaticus is considered as a later heterotypic synonym of S. chryseus and, consequently, we emend the description of S. chryseus.
- Subjects :
- Alkalies
Altitude
Bacterial Typing Techniques
Base Composition
Chile
DNA, Bacterial genetics
Diaminopimelic Acid chemistry
Fatty Acids chemistry
Hydrogen-Ion Concentration
Nucleic Acid Hybridization
Peptidoglycan chemistry
Phospholipids chemistry
RNA, Ribosomal, 16S genetics
Sequence Analysis, DNA
Streptomyces isolation & purification
Desert Climate
Phylogeny
Soil Microbiology
Streptomyces classification
Subjects
Details
- Language :
- English
- ISSN :
- 1466-5034
- Volume :
- 69
- Issue :
- 8
- Database :
- MEDLINE
- Journal :
- International journal of systematic and evolutionary microbiology
- Publication Type :
- Academic Journal
- Accession number :
- 31204968
- Full Text :
- https://doi.org/10.1099/ijsem.0.003525