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CommonMind Consortium provides transcriptomic and epigenomic data for Schizophrenia and Bipolar Disorder.

Authors :
Hoffman GE
Bendl J
Voloudakis G
Montgomery KS
Sloofman L
Wang YC
Shah HR
Hauberg ME
Johnson JS
Girdhar K
Song L
Fullard JF
Kramer R
Hahn CG
Gur R
Marenco S
Lipska BK
Lewis DA
Haroutunian V
Hemby S
Sullivan P
Akbarian S
Chess A
Buxbaum JD
Crawford GE
Domenici E
Devlin B
Sieberts SK
Peters MA
Roussos P
Source :
Scientific data [Sci Data] 2019 Sep 24; Vol. 6 (1), pp. 180. Date of Electronic Publication: 2019 Sep 24.
Publication Year :
2019

Abstract

Schizophrenia and bipolar disorder are serious mental illnesses that affect more than 2% of adults. While large-scale genetics studies have identified genomic regions associated with disease risk, less is known about the molecular mechanisms by which risk alleles with small effects lead to schizophrenia and bipolar disorder. In order to fill this gap between genetics and disease phenotype, we have undertaken a multi-cohort genomics study of postmortem brains from controls, individuals with schizophrenia and bipolar disorder. Here we present a public resource of functional genomic data from the dorsolateral prefrontal cortex (DLPFC; Brodmann areas 9 and 46) of 986 individuals from 4 separate brain banks, including 353 diagnosed with schizophrenia and 120 with bipolar disorder. The genomic data include RNA-seq and SNP genotypes on 980 individuals, and ATAC-seq on 269 individuals, of which 264 are a subset of individuals with RNA-seq. We have performed extensive preprocessing and quality control on these data so that the research community can take advantage of this public resource available on the Synapse platform at http://CommonMind.org .

Details

Language :
English
ISSN :
2052-4463
Volume :
6
Issue :
1
Database :
MEDLINE
Journal :
Scientific data
Publication Type :
Academic Journal
Accession number :
31551426
Full Text :
https://doi.org/10.1038/s41597-019-0183-6