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Ktedonosporobacter rubrisoli gen. nov., sp. nov., a novel representative of the class Ktedonobacteria , isolated from red soil, and proposal of Ktedonosporobacteraceae fam. nov.

Authors :
Yan B
Guo X
Liu M
Huang Y
Source :
International journal of systematic and evolutionary microbiology [Int J Syst Evol Microbiol] 2020 Feb; Vol. 70 (2), pp. 1015-1025.
Publication Year :
2020

Abstract

A novel filamentous, spore-forming, Gram-stain-positive bacterium, designated SCAWS-G2 <superscript>T</superscript> , was isolated from red soil in Jiangxi Province, PR China. The strain grew at 25-45 °C and at pH 4.0-7.0, and was able to tolerate up to 50 mM Zn <superscript>2+</superscript> . The complete genome of strain SCAWS-G2 <superscript>T</superscript> was a circular chromosome of ~11.34 Mb, which contained four 16S rRNA genes with three sequence types (0.4-0.8 % differences). Phylogenetic analysis based on 16S rRNA gene sequences showed that strain SCAWS-G2 <superscript>T</superscript> formed a distinct lineage within the order Ktedonobacterales , showing <89.2 % sequence similarities to the recognized taxa of this order. The whole-genome based phylogenomic tree separated strain SCAWS-G2 <superscript>T</superscript> from the recognized families within Ktedonobacterales . The genome-wide average nucleotide identity values between strain SCAWS-G2 <superscript>T</superscript> and the related type strains were <68.2 %. The strain can also be differentiated from the recognized families by a number of phenotypic characteristics. The polar lipids of SCAWS-G2 <superscript>T</superscript> were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol, seven unidentified glycolipids and one unidentified lipid. The peptidoglycan amino acids contained ornithine, glycine, glutamic acid and alanine, and the cell-wall sugars were mainly galactose and rhamnose. The major fatty acids were C <subscript>16 : 1</subscript> 2-OH, C <subscript>16 : 0</subscript> and iso-C <subscript>17 : 0</subscript> . Based on all these data, we propose that strain SCAWS-G2 <superscript>T</superscript> represents a novel genus and species, Ktedonosporobacter rubrisoli gen. nov., sp. nov., within the new family Ktedonosporobacteraceae fam. nov. of the order Ktedonobacterales . The type strain of Ktedonosporobacter rubrisoli is SCAWS-G2 <superscript>T</superscript> (=CGMCC 1.16132 <superscript>T</superscript> =DSM 105258 <superscript>T</superscript> ).

Details

Language :
English
ISSN :
1466-5034
Volume :
70
Issue :
2
Database :
MEDLINE
Journal :
International journal of systematic and evolutionary microbiology
Publication Type :
Academic Journal
Accession number :
31730027
Full Text :
https://doi.org/10.1099/ijsem.0.003864