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An Integrated Pan-Cancer Analysis and Structure-Based Virtual Screening of GPR15.
- Source :
-
International journal of molecular sciences [Int J Mol Sci] 2019 Dec 10; Vol. 20 (24). Date of Electronic Publication: 2019 Dec 10. - Publication Year :
- 2019
-
Abstract
- G protein-coupled receptor 15 (GPR15, also known as BOB) is an extensively studied orphan G protein-coupled receptors (GPCRs) involving human immunodeficiency virus (HIV) infection, colonic inflammation, and smoking-related diseases. Recently, GPR15 was deorphanized and its corresponding natural ligand demonstrated an ability to inhibit cancer cell growth. However, no study reported the potential role of GPR15 in a pan-cancer manner. Using large-scale publicly available data from the Cancer Genome Atlas (TCGA) and the Genotype-Tissue Expression (GTEx) databases, we found that GPR15 expression is significantly lower in colon adenocarcinoma (COAD) and rectal adenocarcinoma (READ) than in normal tissues. Among 33 cancer types, GPR15 expression was significantly positively correlated with the prognoses of COAD, neck squamous carcinoma (HNSC), and lung adenocarcinoma (LUAD) and significantly negatively correlated with stomach adenocarcinoma (STAD). This study also revealed that commonly upregulated gene sets in the high GPR15 expression group (stratified via median) of COAD, HNSC, LUAD, and STAD are enriched in immune systems, indicating that GPR15 might be considered as a potential target for cancer immunotherapy. Furthermore, we modelled the 3D structure of GPR15 and conducted structure-based virtual screening. The top eight hit compounds were screened and then subjected to molecular dynamics (MD) simulation for stability analysis. Our study provides novel insights into the role of GPR15 in a pan-cancer manner and discovered a potential hit compound for GPR15 antagonists.
- Subjects :
- Antineoplastic Agents chemistry
Computer Simulation
Early Detection of Cancer
Gene Expression Regulation, Neoplastic
Humans
Models, Molecular
Molecular Docking Simulation
Mutation
Neoplasms drug therapy
Prognosis
Receptors, G-Protein-Coupled chemistry
Receptors, Peptide chemistry
Structure-Activity Relationship
Antineoplastic Agents pharmacology
Neoplasms genetics
Receptors, G-Protein-Coupled antagonists & inhibitors
Receptors, G-Protein-Coupled genetics
Receptors, Peptide antagonists & inhibitors
Receptors, Peptide genetics
Subjects
Details
- Language :
- English
- ISSN :
- 1422-0067
- Volume :
- 20
- Issue :
- 24
- Database :
- MEDLINE
- Journal :
- International journal of molecular sciences
- Publication Type :
- Academic Journal
- Accession number :
- 31835584
- Full Text :
- https://doi.org/10.3390/ijms20246226