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Lysobacter prati sp. nov., isolated from a plateau meadow sample.
- Source :
-
Antonie van Leeuwenhoek [Antonie Van Leeuwenhoek] 2020 Jun; Vol. 113 (6), pp. 763-772. Date of Electronic Publication: 2020 Jan 24. - Publication Year :
- 2020
-
Abstract
- A novel proteobacterial strain designated SYSU H10001 <superscript>T</superscript> was isolated from a soil sample collected from plateau meadow in Hongyuan county, Sichuan province, south-western China. The taxonomic position of the strain was investigated using a polyphasic approach. On the basis of 16S rRNA gene sequence similarities and phylogenetic analysis, strain SYSU H10001 <superscript>T</superscript> was most closely related to Lysobacter soli KCTC 22011 <superscript>T</superscript> (98.6%, sequence similarity) and Lysobacter panacisoli JCM 19212 <superscript>T</superscript> (98.2%). The prediction result of secondary metabolites based on genome shown that the strain SYSU H10001 <superscript>T</superscript> contained 3 clusters of bacteriocins, 1 cluster of non-ribosomal peptide synthetase, 1 cluster of type 1 polyketide synthase and 1 cluster of arylpolyene. In addition, the major isoprenoid quinone was Q-8 and the major fatty acids were identified as iso-C <subscript>15:0</subscript> , iso-C <subscript>17:0</subscript> and Summed feature 9. The polar lipids contained diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, and three unidentified phospholipids. The genomic DNA G + C content of strain SYSU H10001 <superscript>T</superscript> was 66.5% (genome). On the basis of phenotypic, genotypic and phylogenetic data, strain SYSU H10001 <superscript>T</superscript> represents a novel species of the genus Lysobacter, for which the name Lysobacter prati sp. nov. is proposed. The type strain is SYSU H10001 <superscript>T</superscript> (= KCTC 72062 <superscript>T</superscript> = CGMCC 1.16662 <superscript>T</superscript> ).
- Subjects :
- Anti-Bacterial Agents biosynthesis
Bacteriocins biosynthesis
Bacteriocins genetics
China
Fatty Acids analysis
Genes, Bacterial
Genome, Bacterial
Grassland
Phylogeny
RNA, Ribosomal, 16S genetics
Secondary Metabolism
Lysobacter classification
Lysobacter genetics
Lysobacter isolation & purification
Subjects
Details
- Language :
- English
- ISSN :
- 1572-9699
- Volume :
- 113
- Issue :
- 6
- Database :
- MEDLINE
- Journal :
- Antonie van Leeuwenhoek
- Publication Type :
- Academic Journal
- Accession number :
- 31980979
- Full Text :
- https://doi.org/10.1007/s10482-020-01386-6