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Nocardioides euryhalodurans sp. nov., Nocardioides seonyuensis sp. nov. and Nocardioides eburneiflavus sp. nov., isolated from soil.
- Source :
-
International journal of systematic and evolutionary microbiology [Int J Syst Evol Microbiol] 2020 Apr; Vol. 70 (4), pp. 2682-2689. Date of Electronic Publication: 2020 Mar 06. - Publication Year :
- 2020
-
Abstract
- Three aerobic, rod-shaped actinobacterial strains, designated MMS17-SY117 <superscript>T</superscript> , MMS17-SY207-3 <superscript>T</superscript> and MMS17-SY213 <superscript>T</superscript> , were isolated from soil and their taxonomic positions were analysed using a polyphasic approach. The isolates showed best growth at 30 °C, pH 7 and 0-1 % (w/v) NaCl. On the basis of 16S rRNA gene sequence similarity, the isolates were affiliated to the genus Nocardioides , and the closest species to MMS17-SY117 <superscript>T</superscript> , MMS17-SY207-3 <superscript>T</superscript> and MMS17-SY213 <superscript>T</superscript> were Nocardioides aestuarii JC2056 <superscript>T</superscript> (97.76%), Nocardioides currus IB-3 <superscript>T</superscript> (97.41%) and Nocardioides exalbidus RC825 <superscript>T</superscript> (98.71%), respectively. Each isolate formed a distinct cluster within the Nocardioides clade in the phylogenetic tree. The orthologous average nucleotide identity and digital DNA-DNA hybridization values were in the range of 74.4-85.7 % and 16.6-39.2 %, respectively, with the type strains of related species. The major polar lipids in all three strains were phosphatidylinositol, phosphatidylglycerol and diphosphatidylglycerol. The predominant fatty acids were iso-C <subscript>16 : 0</subscript> and C <subscript>17 : 1</subscript> ω8 c . MK-8(H <subscript>4</subscript> ) was the major isoprenoid quinone and ll-DAP was the major diamino acid. Galactose, glucose and rhamnose were present in the whole-cell hydrolysate, and MMS17-SY213 <superscript>T</superscript> also contained mannose and ribose. The DNA G+C contents of MMS17-SY117 <superscript>T</superscript> , MMS17-SY207-3 <superscript>T</superscript> and MMS17-SY213 <superscript>T</superscript> were 72.2, 70.4 and 71.5 mol%, respectively. The phylogenetic, phenotypic and chemotaxonomic data supported the classification of each strain as representing a new species of Nocardioides , for which the names Nocardioides euryhalodurans sp. nov. (MMS17-SY117 <superscript>T</superscript> =KCTC 49175 <superscript>T</superscript> =JCM 32831 <superscript>T</superscript> ), Nocardioides seonyuensis sp. nov. (MMS17-SY207-3 <superscript>T</superscript> =KCTC 49176 <superscript>T</superscript> =JCM 32832 <superscript>T</superscript> ) and Nocardioides eburneiflavus sp. nov. (MMS17-SY213 <superscript>T</superscript> =KCTC 49177 <superscript>T</superscript> =JCM 32833 <superscript>T</superscript> ) are proposed accordingly.
- Subjects :
- Actinobacteria isolation & purification
Bacterial Typing Techniques
Base Composition
DNA, Bacterial genetics
Diaminopimelic Acid chemistry
Fatty Acids chemistry
Nucleic Acid Hybridization
Phospholipids chemistry
RNA, Ribosomal, 16S genetics
Republic of Korea
Sand microbiology
Sequence Analysis, DNA
Vitamin K 2 analogs & derivatives
Vitamin K 2 chemistry
Actinobacteria classification
Phylogeny
Soil Microbiology
Subjects
Details
- Language :
- English
- ISSN :
- 1466-5034
- Volume :
- 70
- Issue :
- 4
- Database :
- MEDLINE
- Journal :
- International journal of systematic and evolutionary microbiology
- Publication Type :
- Academic Journal
- Accession number :
- 32141810
- Full Text :
- https://doi.org/10.1099/ijsem.0.004095