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Nocardioides euryhalodurans sp. nov., Nocardioides seonyuensis sp. nov. and Nocardioides eburneiflavus sp. nov., isolated from soil.

Authors :
Roh SG
Lee C
Kim MK
Kang HJ
Kim YS
Kim MJ
Malik A
Kim SB
Source :
International journal of systematic and evolutionary microbiology [Int J Syst Evol Microbiol] 2020 Apr; Vol. 70 (4), pp. 2682-2689. Date of Electronic Publication: 2020 Mar 06.
Publication Year :
2020

Abstract

Three aerobic, rod-shaped actinobacterial strains, designated MMS17-SY117 <superscript>T</superscript> , MMS17-SY207-3 <superscript>T</superscript> and MMS17-SY213 <superscript>T</superscript> , were isolated from soil and their taxonomic positions were analysed using a polyphasic approach. The isolates showed best growth at 30 °C, pH 7 and 0-1 % (w/v) NaCl. On the basis of 16S rRNA gene sequence similarity, the isolates were affiliated to the genus Nocardioides , and the closest species to MMS17-SY117 <superscript>T</superscript> , MMS17-SY207-3 <superscript>T</superscript> and MMS17-SY213 <superscript>T</superscript> were Nocardioides aestuarii JC2056 <superscript>T</superscript> (97.76%), Nocardioides currus IB-3 <superscript>T</superscript> (97.41%) and Nocardioides exalbidus RC825 <superscript>T</superscript> (98.71%), respectively. Each isolate formed a distinct cluster within the Nocardioides clade in the phylogenetic tree. The orthologous average nucleotide identity and digital DNA-DNA hybridization values were in the range of 74.4-85.7 % and 16.6-39.2 %, respectively, with the type strains of related species. The major polar lipids in all three strains were phosphatidylinositol, phosphatidylglycerol and diphosphatidylglycerol. The predominant fatty acids were iso-C <subscript>16 : 0</subscript> and C <subscript>17 : 1</subscript>  ω8 c . MK-8(H <subscript>4</subscript> ) was the major isoprenoid quinone and ll-DAP was the major diamino acid. Galactose, glucose and rhamnose were present in the whole-cell hydrolysate, and MMS17-SY213 <superscript>T</superscript> also contained mannose and ribose. The DNA G+C contents of MMS17-SY117 <superscript>T</superscript> , MMS17-SY207-3 <superscript>T</superscript> and MMS17-SY213 <superscript>T</superscript> were 72.2, 70.4 and 71.5 mol%, respectively. The phylogenetic, phenotypic and chemotaxonomic data supported the classification of each strain as representing a new species of Nocardioides , for which the names Nocardioides euryhalodurans sp. nov. (MMS17-SY117 <superscript>T</superscript> =KCTC 49175 <superscript>T</superscript> =JCM 32831 <superscript>T</superscript> ), Nocardioides seonyuensis sp. nov. (MMS17-SY207-3 <superscript>T</superscript> =KCTC 49176 <superscript>T</superscript> =JCM 32832 <superscript>T</superscript> ) and Nocardioides eburneiflavus sp. nov. (MMS17-SY213 <superscript>T</superscript> =KCTC 49177 <superscript>T</superscript> =JCM 32833 <superscript>T</superscript> ) are proposed accordingly.

Details

Language :
English
ISSN :
1466-5034
Volume :
70
Issue :
4
Database :
MEDLINE
Journal :
International journal of systematic and evolutionary microbiology
Publication Type :
Academic Journal
Accession number :
32141810
Full Text :
https://doi.org/10.1099/ijsem.0.004095