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NWPEsSe: An Adaptive-Learning Global Optimization Algorithm for Nanosized Cluster Systems.

Authors :
Zhang J
Glezakou VA
Rousseau R
Nguyen MT
Source :
Journal of chemical theory and computation [J Chem Theory Comput] 2020 Jun 09; Vol. 16 (6), pp. 3947-3958. Date of Electronic Publication: 2020 May 14.
Publication Year :
2020

Abstract

Global optimization constitutes an important and fundamental problem in theoretical studies in many chemical fields, such as catalysis, materials, or separations problems. In this paper, a novel algorithm has been developed for the global optimization of large systems including neat and ligated clusters in the gas phase and supported clusters in periodic boundary conditions. The method is based on an updated artificial bee colony (ABC) algorithm method, that allows for adaptive-learning during the search process. The new algorithm is tested against four classes of systems of diverse chemical nature: gas phase Au <subscript>55</subscript> , ligated Au <subscript>8</subscript> <superscript>2+</superscript> , Au <subscript>8</subscript> supported on graphene oxide and defected rutile, and a large cluster assembly [Co <subscript>6</subscript> Te <subscript>8</subscript> (PEt <subscript>3</subscript> ) <subscript>6</subscript> ][C <subscript>60</subscript> ] <subscript> n </subscript> , with sizes ranging between 1 and 3 nm and containing up to 1300 atoms. Reliable global minima (GMs) are obtained for all cases, either confirming published data or reporting new lower energy structures. The algorithm and interface to other codes in the form of an independent program, Northwest Potential Energy Search Engine (NWPEsSe), is freely available, and it provides a powerful and efficient approach for global optimization of nanosized cluster systems.

Details

Language :
English
ISSN :
1549-9626
Volume :
16
Issue :
6
Database :
MEDLINE
Journal :
Journal of chemical theory and computation
Publication Type :
Academic Journal
Accession number :
32364725
Full Text :
https://doi.org/10.1021/acs.jctc.9b01107