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Sphingomonas parva sp. nov., isolated from soil in Jeju Island.

Authors :
Maeng S
Park Y
Han JH
Lee SE
Ha CW
Kim MK
Subramani G
Source :
Archives of microbiology [Arch Microbiol] 2020 Nov; Vol. 202 (9), pp. 2429-2436. Date of Electronic Publication: 2020 Jun 27.
Publication Year :
2020

Abstract

A Gram staining-negative, yellow-colored, rod-shaped, non-motile and aerobic, designated strain 17J27-24 <superscript>T</superscript> was isolated from a soil sample in Korea. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain 17J27-24 <superscript>T</superscript> was related to the members of the family Sphingomonadaceae and formed a distinct monophyletic cluster within the genus Sphingomonas with Sphingomonas deserti (98.3% 16S rRNA gene sequence similarity). Growth was observed at 30 °C (optimum), at pH 7.0 (optimum), and in the absence of NaCl (%). The predominant cellular fatty acids were summed feature 8 (18:1 ω7c and/or 18:1 ω6c) and C <subscript>17:1</subscript> ω6c. The major respiratory quinone was Q10. The polar lipids profile comprised of diphosphatidylglycerol (DPG), phosphatidylglycerol (PG), phosphatidylethanolamine (PE), and sphingoglycolipid (SGL). The DNA G + C content was 77.8 mol%. The average nucleotide identity (ANI) and digital DNA-DNA hybridisation (dDDH) values between 17J27-24 <superscript>T</superscript> and its phylogenetically closest Sphingomonas deserti (KCTC 62411 <superscript>T</superscript> ) were below the established cut-off < 94% (ANI) and < 70% (dDDH) for species delineation. Moreover, the results of the polyphasic approach confirmed that strain 17J27-24 <superscript>T</superscript> represents a novel species of the genus Sphingomonas within the family Sphingomonadaceae, for which the name Sphingomonas parva sp. nov. is proposed. The type strain of this species is 17J27-24 <superscript>T</superscript> (= KCTC 62208 <superscript>T</superscript>  = JCM 3896 <superscript>T</superscript> ). An emended description of the species Sphingomonas parva is provided.

Details

Language :
English
ISSN :
1432-072X
Volume :
202
Issue :
9
Database :
MEDLINE
Journal :
Archives of microbiology
Publication Type :
Academic Journal
Accession number :
32594212
Full Text :
https://doi.org/10.1007/s00203-020-01925-9