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Paucihalobacter ruber gen. nov., sp. nov., isolated from a haloalkaline lake sediment sample.

Authors :
Wu SG
Wang JJ
Wang JN
Chen Q
Du ZJ
Li YZ
Source :
International journal of systematic and evolutionary microbiology [Int J Syst Evol Microbiol] 2020 Oct; Vol. 70 (10), pp. 5373-5381. Date of Electronic Publication: 2020 Sep 04.
Publication Year :
2020

Abstract

A Gram-stain-negative, strictly aerobic, non-motile, rod-shaped bacterium, designated CWB-1 <superscript>T</superscript> , was isolated from a haloalkaline lake sediment sample collected from the bottom of Chaiwopu Lake, Urumchi, Xinjiang Province, PR China. Strain CWB-1 <superscript>T</superscript> grew at 4-40 °C (optimum, 30-35 °C), pH 6.5-9.0 (optimum, pH 6.5-7.0) and with 0.5-5.5 % (w/v) NaCl (optimum, 2.5-3.0 %). Phylogenetic analyses based on the 16S rRNA gene sequence and the whole genome sequence both revealed that strain CWB-1 <superscript>T</superscript> belonged to the family Flavobacteriaceae . The strain had the highest similarity of the 16S rRNA gene sequence to Psychroserpens jangbogonensis PAMC 27130 <superscript>T</superscript> (92.8 %). The genome of strain CWB-1 <superscript>T</superscript> was 3 548 011 bp long with 36.3 % DNA G+C content. The predominant fatty acids (>10 %) in the CWB-1 <superscript>T</superscript> cells were iso-C <subscript>15 : 0</subscript> , iso-C <subscript>17 : 0</subscript> 3-OH and summed feature 1 (iso-C <subscript>15 : 1</subscript>  H/C <subscript>13 : 0</subscript> 3-OH). The major respiratory quinone was menaquinone-6 and the major polar lipids were phosphatidylethanolamine, an unidentified aminolipid and two unidentified lipids. Based on the phylogenetic analyses, as well as the phenotypic characteristics, a novel genus and species of the family Flavobacteriaceae , Paucihalobacter ruber gen. nov., sp. nov., is proposed. The type strain is CWB-1 <superscript>T</superscript> (=KCTC 72450 <superscript>T</superscript> =CGMCC 1.17149 <superscript>T</superscript> ).

Details

Language :
English
ISSN :
1466-5034
Volume :
70
Issue :
10
Database :
MEDLINE
Journal :
International journal of systematic and evolutionary microbiology
Publication Type :
Academic Journal
Accession number :
32886596
Full Text :
https://doi.org/10.1099/ijsem.0.004421