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Dipylidium caninum draft genome - a new resource for comparative genomic and genetic explorations of flatworms.
- Source :
-
Genomics [Genomics] 2021 May; Vol. 113 (3), pp. 1272-1280. Date of Electronic Publication: 2021 Mar 04. - Publication Year :
- 2021
-
Abstract
- Here, we present a draft genome of the tapeworm Dipylidium caninum (family Dipylidiidae) and compare it with other cestode genomes. This draft genome of D. caninum is 110 Mb in size, has a repeat content of ~13.4% and is predicted to encode ~10,000 protein-coding genes. We inferred excretory/secretory molecules (representing the secretome), other key groups of proteins (including peptidases, kinases, phosphatases, GTPases, receptors, transporters and ion-channels) and predicted potential intervention targets for future evaluation. Using 144 shared single-copy orthologous sequences, we investigated the genetic relationships of cestodes for which nuclear genomes are available. This study provides first insights into the molecular biology of D. caninum and a new resource for comparative genomic and genetic explorations of this and other flatworms.<br /> (Copyright © 2021 Elsevier Inc. All rights reserved.)
- Subjects :
- Animals
Genomics
Cestoda genetics
Cestode Infections
Platyhelminths
Subjects
Details
- Language :
- English
- ISSN :
- 1089-8646
- Volume :
- 113
- Issue :
- 3
- Database :
- MEDLINE
- Journal :
- Genomics
- Publication Type :
- Academic Journal
- Accession number :
- 33677058
- Full Text :
- https://doi.org/10.1016/j.ygeno.2021.02.019