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Dipylidium caninum draft genome - a new resource for comparative genomic and genetic explorations of flatworms.

Authors :
Liu GH
Korhonen PK
Young ND
Lu J
Wang T
Fu YT
Koehler AV
Hofmann A
Chang BCH
Wang S
Li N
Lin CY
Zhang H
Xiangli L
Lin L
Liu WM
Li N
Li HW
Gasser RB
Zhu XQ
Source :
Genomics [Genomics] 2021 May; Vol. 113 (3), pp. 1272-1280. Date of Electronic Publication: 2021 Mar 04.
Publication Year :
2021

Abstract

Here, we present a draft genome of the tapeworm Dipylidium caninum (family Dipylidiidae) and compare it with other cestode genomes. This draft genome of D. caninum is 110 Mb in size, has a repeat content of ~13.4% and is predicted to encode ~10,000 protein-coding genes. We inferred excretory/secretory molecules (representing the secretome), other key groups of proteins (including peptidases, kinases, phosphatases, GTPases, receptors, transporters and ion-channels) and predicted potential intervention targets for future evaluation. Using 144 shared single-copy orthologous sequences, we investigated the genetic relationships of cestodes for which nuclear genomes are available. This study provides first insights into the molecular biology of D. caninum and a new resource for comparative genomic and genetic explorations of this and other flatworms.<br /> (Copyright © 2021 Elsevier Inc. All rights reserved.)

Details

Language :
English
ISSN :
1089-8646
Volume :
113
Issue :
3
Database :
MEDLINE
Journal :
Genomics
Publication Type :
Academic Journal
Accession number :
33677058
Full Text :
https://doi.org/10.1016/j.ygeno.2021.02.019