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An Annotated Draft Genome for the Andean Bear, Tremarctos ornatus.

Authors :
Saremi NF
Oppenheimer J
Vollmers C
O'Connell B
Milne SA
Byrne A
Yu L
Ryder OA
Green RE
Shapiro B
Source :
The Journal of heredity [J Hered] 2021 Jul 15; Vol. 112 (4), pp. 377-384.
Publication Year :
2021

Abstract

The Andean bear is the only extant member of the Tremarctine subfamily and the only extant ursid species to inhabit South America. Here, we present an annotated de novo assembly of a nuclear genome from a captive-born female Andean bear, Mischief, generated using a combination of short and long DNA and RNA reads. Our final assembly has a length of 2.23 Gb, and a scaffold N50 of 21.12 Mb, contig N50 of 23.5 kb, and BUSCO score of 88%. The Andean bear genome will be a useful resource for exploring the complex phylogenetic history of extinct and extant bear species and for future population genetics studies of Andean bears.<br /> (© The American Genetic Association. 2021.)

Details

Language :
English
ISSN :
1465-7333
Volume :
112
Issue :
4
Database :
MEDLINE
Journal :
The Journal of heredity
Publication Type :
Academic Journal
Accession number :
33882130
Full Text :
https://doi.org/10.1093/jhered/esab021