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Prediction and characterization of diffuse large B-cell lymphoma cell-of-origin subtypes using targeted sequencing.

Authors :
Trabucco SE
Sokol ES
Maund SL
Moore JA
Frampton GM
Albacker LA
Oestergaard MZ
Venstrom J
Sehn LH
Bolen CR
Source :
Future oncology (London, England) [Future Oncol] 2021 Nov; Vol. 17 (31), pp. 4171-4183. Date of Electronic Publication: 2021 Jul 27.
Publication Year :
2021

Abstract

The aim of the present study was to determine cell of origin (COO) from a platform using a DNA-based method, COO DNA classifier (COODC). A targeted exome-sequencing platform that applies the mutational profile of a sample was used to classify COO subtype. Two major mutational signatures associated with COO were identified: Catalogue of Somatic Mutations in Cancer (COSMIC) signature 23 enriched in activated B cell (ABC) and COSMIC signature 3, which suggested increased frequency in germinal center B cell (GCB). Differential mutation signatures linked oncogenesis to mutational processes during B-cell activation, confirming the putative origin of GCB and ABC subtypes. Integrating COO with comprehensive genomic profiling enabled identification of features associated with COO and demonstrated the feasibility of determining COO without RNA.

Details

Language :
English
ISSN :
1744-8301
Volume :
17
Issue :
31
Database :
MEDLINE
Journal :
Future oncology (London, England)
Publication Type :
Academic Journal
Accession number :
34313135
Full Text :
https://doi.org/10.2217/fon-2021-0370