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ViroidDB: a database of viroids and viroid-like circular RNAs.
- Source :
-
Nucleic acids research [Nucleic Acids Res] 2022 Jan 07; Vol. 50 (D1), pp. D432-D438. - Publication Year :
- 2022
-
Abstract
- We introduce ViroidDB, a value-added database that attempts to collect all known viroid and viroid-like circular RNA sequences into a single resource. Spanning about 10 000 unique sequences, ViroidDB includes viroids, retroviroid-like elements, small circular satellite RNAs, ribozyviruses, and retrozymes. Each sequence's secondary structure, ribozyme content, and cluster membership are predicted via a custom pipeline optimized for handling circular RNAs. The data can be explored via a purpose-built user interface that features visualizations, multiple sequence alignments, and a portal for downloading bulk data. Users can browse the data by sequence type, taxon, or typo-tolerant search of metadata fields. The database is freely accessible at https://viroids.org.<br /> (Published by Oxford University Press on behalf of Nucleic Acids Research 2021.)
- Subjects :
- Base Sequence
Internet
Metadata
Nucleic Acid Conformation
Plant Diseases virology
Plants virology
RNA, Catalytic chemistry
RNA, Catalytic classification
RNA, Catalytic metabolism
RNA, Circular chemistry
RNA, Circular classification
RNA, Circular metabolism
RNA, Viral chemistry
RNA, Viral classification
RNA, Viral metabolism
Sequence Alignment
Viroids classification
Viroids metabolism
Databases, Nucleic Acid
RNA, Catalytic genetics
RNA, Circular genetics
RNA, Viral genetics
Software
Viroids genetics
Subjects
Details
- Language :
- English
- ISSN :
- 1362-4962
- Volume :
- 50
- Issue :
- D1
- Database :
- MEDLINE
- Journal :
- Nucleic acids research
- Publication Type :
- Academic Journal
- Accession number :
- 34751403
- Full Text :
- https://doi.org/10.1093/nar/gkab974