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Noviherbaspirillum aridicola sp. nov., isolated from an arid soil in Pakistan.
- Source :
-
International journal of systematic and evolutionary microbiology [Int J Syst Evol Microbiol] 2022 Feb; Vol. 72 (2). - Publication Year :
- 2022
-
Abstract
- Strain NCCP-691 <superscript>T</superscript> was isolated from a soil sample collected from an arid soil in Karak, Khyber Pakhtunkhwa, Pakistan. Phenotypically, the cells were Gram-stain-negative, aerobic and motile rods. The organism was able to grow between 20-40 °C (optimum at 30-37 °C), at pH 5.5-8.0 (optimum at pH 7.0-7.2) and tolerated 0-1.5% NaCl (w/v) (optimum at 0-0.5). Based on 16S rRNA gene sequences, strain NCCP-691 <superscript>T</superscript> formed a distinct phylogenetic clade with Noviherbaspirillum arenae , N . agri , N . denitrificans and N . autotrophicum (having sequence similarities of 99.0; 98.1; 98.0 and 97.7% respectively). Phylogenetic analyses based on the whole genome sequences confirmed that strain NCCP-691 <superscript>T</superscript> should be affiliated to the genus Noviherbaspirillum . The average nucleotide identity values compared to other species of Noviherbaspirillum were below 95-96 % and digital DNA-DNA hybridization values were less than 70 %. Chemotaxonomic analyses showed that the strain had ubiquinone-8, as the only respiratory quinine. The major cellular fatty acids were summed feature 3 (C <subscript>16 : 1</subscript> ω 7 c /C <subscript>16 : 1</subscript> ω 6 c, 35.9 %), summed feature 8 (C <subscript>18 : 1</subscript> ω 7 c /C <subscript>18 : 1</subscript> ω 6 c, 26.9 %) and C <subscript>16 : 0</subscript> (22.9 %) and the polar lipid profile was composed of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and phosphatidylcholine. The genomic DNA G+C content was 65.5 mol% (from draft genome). Genome analyses showed that strain NCCP-691 <superscript>T</superscript> had terpene and arylpolyene biosynthetic genes clusters and genes related to resistance against heavy metals. Based on phylogenetic analyses, phenotypic features and genomic comparison, it is proposed that strain NCCP-691 <superscript>T</superscript> is a novel species of the genus Noviherbaspirillum and the name Noviherbaspirillum aridicola sp. nov. is proposed. Type strain is NCCP-691 <superscript>T</superscript> (=KCTC 52721 <superscript>T</superscript> =CGMCC 1.13600 <superscript>T</superscript> ).
- Subjects :
- Bacterial Typing Techniques
Base Composition
DNA, Bacterial genetics
Fatty Acids chemistry
Nucleic Acid Hybridization
Oxalobacteraceae isolation & purification
Pakistan
Phospholipids chemistry
RNA, Ribosomal, 16S genetics
Sequence Analysis, DNA
Ubiquinone chemistry
Oxalobacteraceae classification
Phylogeny
Soil Microbiology
Subjects
Details
- Language :
- English
- ISSN :
- 1466-5034
- Volume :
- 72
- Issue :
- 2
- Database :
- MEDLINE
- Journal :
- International journal of systematic and evolutionary microbiology
- Publication Type :
- Academic Journal
- Accession number :
- 35138240
- Full Text :
- https://doi.org/10.1099/ijsem.0.005232