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Unsupervised cross-domain translation via deep learning and adversarial attention neural networks and application to music-inspired protein designs.

Authors :
Buehler MJ
Source :
Patterns (New York, N.Y.) [Patterns (N Y)] 2023 Feb 14; Vol. 4 (3), pp. 100692. Date of Electronic Publication: 2023 Feb 14 (Print Publication: 2023).
Publication Year :
2023

Abstract

Taking inspiration from nature about how to design materials has been a fruitful approach, used by humans for millennia. In this paper we report a method that allows us to discover how patterns in disparate domains can be reversibly related using a computationally rigorous approach, the AttentionCrossTranslation model. The algorithm discovers cycle- and self-consistent relationships and offers a bidirectional translation of information across disparate knowledge domains. The approach is validated with a set of known translation problems, and then used to discover a mapping between musical data-based on the corpus of note sequences in J.S. Bach's Goldberg Variations created in 1741-and protein sequence data-information sampled more recently. Using protein folding algorithms, 3D structures of the predicted protein sequences are generated, and their stability is validated using explicit solvent molecular dynamics. Musical scores generated from protein sequences are sonified and rendered into audible sound.<br />Competing Interests: The author declares no competing interests.<br /> (© 2023 The Author(s).)

Details

Language :
English
ISSN :
2666-3899
Volume :
4
Issue :
3
Database :
MEDLINE
Journal :
Patterns (New York, N.Y.)
Publication Type :
Academic Journal
Accession number :
36960446
Full Text :
https://doi.org/10.1016/j.patter.2023.100692