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A primer on Variational Laplace (VL).
- Source :
-
NeuroImage [Neuroimage] 2023 Oct 01; Vol. 279, pp. 120310. Date of Electronic Publication: 2023 Aug 05. - Publication Year :
- 2023
-
Abstract
- This article details a scheme for approximate Bayesian inference, which has underpinned thousands of neuroimaging studies since its introduction 15 years ago. Variational Laplace (VL) provides a generic approach to fitting linear or non-linear models, which may be static or dynamic, returning a posterior probability density over the model parameters and an approximation of log model evidence, which enables Bayesian model comparison. VL applies variational Bayesian inference in conjunction with quadratic or Laplace approximations of the evidence lower bound (free energy). Importantly, update equations do not need to be derived for each model under consideration, providing a general method for fitting a broad class of models. This primer is intended for experimenters and modellers who may wish to fit models to data using variational Bayesian methods, without assuming previous experience of variational Bayes or machine learning. Accompanying code demonstrates how to fit different kinds of model using the reference implementation of the VL scheme in the open-source Statistical Parametric Mapping (SPM) software package. In addition, we provide a standalone software function that does not require SPM, in order to ease translation to other fields, together with detailed pseudocode. Finally, the supplementary materials provide worked derivations of the key equations.<br />Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.<br /> (Copyright © 2023 The Author(s). Published by Elsevier Inc. All rights reserved.)
- Subjects :
- Humans
Bayes Theorem
Machine Learning
Software
Algorithms
Neuroimaging
Subjects
Details
- Language :
- English
- ISSN :
- 1095-9572
- Volume :
- 279
- Database :
- MEDLINE
- Journal :
- NeuroImage
- Publication Type :
- Academic Journal
- Accession number :
- 37544417
- Full Text :
- https://doi.org/10.1016/j.neuroimage.2023.120310