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Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging.

Authors :
Renton AI
Dao TT
Johnstone T
Civier O
Sullivan RP
White DJ
Lyons P
Slade BM
Abbott DF
Amos TJ
Bollmann S
Botting A
Campbell MEJ
Chang J
Close TG
Dörig M
Eckstein K
Egan GF
Evas S
Flandin G
Garner KG
Garrido MI
Ghosh SS
Grignard M
Halchenko YO
Hannan AJ
Heinsfeld AS
Huber L
Hughes ME
Kaczmarzyk JR
Kasper L
Kuhlmann L
Lou K
Mantilla-Ramos YJ
Mattingley JB
Meier ML
Morris J
Narayanan A
Pestilli F
Puce A
Ribeiro FL
Rogasch NC
Rorden C
Schira MM
Shaw TB
Sowman PF
Spitz G
Stewart AW
Ye X
Zhu JD
Narayanan A
Bollmann S
Source :
Nature methods [Nat Methods] 2024 May; Vol. 21 (5), pp. 804-808. Date of Electronic Publication: 2024 Jan 08.
Publication Year :
2024

Abstract

Neuroimaging research requires purpose-built analysis software, which is challenging to install and may produce different results across computing environments. The community-oriented, open-source Neurodesk platform ( https://www.neurodesk.org/ ) harnesses a comprehensive and growing suite of neuroimaging software containers. Neurodesk includes a browser-accessible virtual desktop, command-line interface and computational notebook compatibility, allowing for accessible, flexible, portable and fully reproducible neuroimaging analysis on personal workstations, high-performance computers and the cloud.<br /> (© 2024. The Author(s), under exclusive licence to Springer Nature America, Inc.)

Details

Language :
English
ISSN :
1548-7105
Volume :
21
Issue :
5
Database :
MEDLINE
Journal :
Nature methods
Publication Type :
Academic Journal
Accession number :
38191935
Full Text :
https://doi.org/10.1038/s41592-023-02145-x