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A-SOiD, an active-learning platform for expert-guided, data-efficient discovery of behavior.

Authors :
Tillmann JF
Hsu AI
Schwarz MK
Yttri EA
Source :
Nature methods [Nat Methods] 2024 Apr; Vol. 21 (4), pp. 703-711. Date of Electronic Publication: 2024 Feb 21.
Publication Year :
2024

Abstract

To identify and extract naturalistic behavior, two methods have become popular: supervised and unsupervised. Each approach carries its own strengths and weaknesses (for example, user bias, training cost, complexity and action discovery), which the user must consider in their decision. Here, an active-learning platform, A-SOiD, blends these strengths, and in doing so, overcomes several of their inherent drawbacks. A-SOiD iteratively learns user-defined groups with a fraction of the usual training data, while attaining expansive classification through directed unsupervised classification. In socially interacting mice, A-SOiD outperformed standard methods despite requiring 85% less training data. Additionally, it isolated ethologically distinct mouse interactions via unsupervised classification. We observed similar performance and efficiency using nonhuman primate and human three-dimensional pose data. In both cases, the transparency in A-SOiD's cluster definitions revealed the defining features of the supervised classification through a game-theoretic approach. To facilitate use, A-SOiD comes as an intuitive, open-source interface for efficient segmentation of user-defined behaviors and discovered sub-actions.<br /> (© 2024. The Author(s), under exclusive licence to Springer Nature America, Inc.)

Details

Language :
English
ISSN :
1548-7105
Volume :
21
Issue :
4
Database :
MEDLINE
Journal :
Nature methods
Publication Type :
Academic Journal
Accession number :
38383746
Full Text :
https://doi.org/10.1038/s41592-024-02200-1