Rigid alignment method for secondary analyses of optical coherence tomography volumes.

Optical coherence tomography (OCT) provides micron level resolution of retinal tissue and is widely used in ophthalmology. Millions of pre-existing OCT images are available from research and clinical databases. Analysis of this data often requires or can benefit significantly from image registration and reduction of speckle noise. One method of reducing noise is to align and average multiple OCT scans together. We propose to use surface feature information and whole volume information to create a novel and simple pipeline that can rigidly align, and average multiple previously acquired 3D OCT volumes from a commercially available OCT device. This pipeline significantly improves both image quality and visualization of clinically relevant image features over single, unaligned volumes from the commercial scanner.
Competing Interests: AHK has received consulting fees, grant support and honoraria from Carl Zeiss Meditec unrelated to this project. Carl Zeiss Meditec played no role in the conception, drafting, review or submission of this manuscript.
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