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Polymorphic transposable elements provide new insights on high-altitude adaptation in the Tibetan Plateau.

Authors :
Modenini G
Abondio P
Sazzini M
Boattini A
Source :
Genomics [Genomics] 2024 May; Vol. 116 (3), pp. 110854. Date of Electronic Publication: 2024 May 01.
Publication Year :
2024

Abstract

Several studies demonstrated that populations living in the Tibetan plateau are genetically and physiologically adapted to high-altitude conditions, showing genomic signatures ascribable to the action of natural selection. However, so far most of them relied solely on inferences drawn from the analysis of coding variants and point mutations. To fill this gap, we focused on the possible role of polymorphic transposable elements in influencing the adaptation of Tibetan and Sherpa highlanders. To do so, we compared high-altitude and middle/low-lander individuals of East Asian ancestry by performing in silico analyses and differentiation tests on 118 modern and ancient samples. We detected several transposable elements associated with high altitude, which map genes involved in cardiovascular, hematological, chem-dependent and respiratory conditions, suggesting that metabolic and signaling pathways taking part in these functions are disproportionately impacted by the effect of environmental stressors in high-altitude individuals. To our knowledge, our study is the first hinting to a possible role of transposable elements in the adaptation of Tibetan and Sherpa highlanders.<br />Competing Interests: Declaration of competing interest The Authors declare that they have no competing interests.<br /> (Copyright © 2024 The Authors. Published by Elsevier Inc. All rights reserved.)

Details

Language :
English
ISSN :
1089-8646
Volume :
116
Issue :
3
Database :
MEDLINE
Journal :
Genomics
Publication Type :
Academic Journal
Accession number :
38701989
Full Text :
https://doi.org/10.1016/j.ygeno.2024.110854