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The haplotype-resolved genome of diploid Chrysanthemum indicum unveils new acacetin synthases genes and their evolutionary history.
- Source :
-
The Plant journal : for cell and molecular biology [Plant J] 2024 Aug; Vol. 119 (3), pp. 1336-1352. Date of Electronic Publication: 2024 Jun 12. - Publication Year :
- 2024
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Abstract
- Acacetin, a flavonoid compound, possesses a wide range of pharmacological effects, including antimicrobial, immune regulation, and anticancer effects. Some key steps in its biosynthetic pathway were largely unknown in flowering plants. Here, we present the first haplotype-resolved genome of Chrysanthemum indicum, whose dried flowers contain abundant flavonoids and have been utilized as traditional Chinese medicine. Various phylogenetic analyses revealed almost equal proportion of three tree topologies among three Chrysanthemum species (C. indicum, C. nankingense, and C. lavandulifolium), indicating that frequent gene flow among Chrysanthemum species or incomplete lineage sorting due to rapid speciation might contribute to conflict topologies. The expanded gene families in C. indicum were associated with oxidative functions. Through comprehensive candidate gene screening, we identified five flavonoid O-methyltransferase (FOMT) candidates, which were highly expressed in flowers and whose expressional levels were significantly correlated with the content of acacetin. Further experiments validated two FOMTs (CI02A009970 and CI03A006662) were capable of catalyzing the conversion of apigenin into acacetin, and these two genes are possibly responsible acacetin accumulation in disc florets and young leaves, respectively. Furthermore, combined analyses of ancestral chromosome reconstruction and phylogenetic trees revealed the distinct evolutionary fates of the two validated FOMT genes. Our study provides new insights into the biosynthetic pathway of flavonoid compounds in the Asteraceae family and offers a model for tracing the origin and evolutionary routes of single genes. These findings will facilitate in vitro biosynthetic production of flavonoid compounds through cellular and metabolic engineering and expedite molecular breeding of C. indicum cultivars.<br /> (© 2024 Society for Experimental Biology and John Wiley & Sons Ltd.)
- Subjects :
- Haplotypes
Diploidy
Flavonoids metabolism
Flavonoids biosynthesis
Flowers genetics
Flowers enzymology
Flowers metabolism
Methyltransferases genetics
Methyltransferases metabolism
Chrysanthemum genetics
Chrysanthemum metabolism
Chrysanthemum enzymology
Flavones metabolism
Phylogeny
Plant Proteins genetics
Plant Proteins metabolism
Genome, Plant genetics
Evolution, Molecular
Subjects
Details
- Language :
- English
- ISSN :
- 1365-313X
- Volume :
- 119
- Issue :
- 3
- Database :
- MEDLINE
- Journal :
- The Plant journal : for cell and molecular biology
- Publication Type :
- Academic Journal
- Accession number :
- 38864745
- Full Text :
- https://doi.org/10.1111/tpj.16854