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Ten simple rules to make computable knowledge shareable and reusable.

Authors :
Conte ML
Boisvert P
Barrison P
Seifi F
Landis-Lewis Z
Flynn A
Friedman CP
Source :
PLoS computational biology [PLoS Comput Biol] 2024 Jun 20; Vol. 20 (6), pp. e1012179. Date of Electronic Publication: 2024 Jun 20 (Print Publication: 2024).
Publication Year :
2024

Abstract

Computable biomedical knowledge (CBK) is: "the result of an analytic and/or deliberative process about human health, or affecting human health, that is explicit, and therefore can be represented and reasned upon using logic, formal standards, and mathematical approaches." Representing biomedical knowledge in a machine-interpretable, computable form increases its ability to be discovered, accessed, understood, and deployed. Computable knowledge artifacts can greatly advance the potential for implementation, reproducibility, or extension of the knowledge by users, who may include practitioners, researchers, and learners. Enriching computable knowledge artifacts may help facilitate reuse and translation into practice. Following the examples of 10 Simple Rules papers for scientific code, software, and applications, we present 10 Simple Rules intended to make shared computable knowledge artifacts more useful and reusable. These rules are mainly for researchers and their teams who have decided that sharing their computable knowledge is important, who wish to go beyond simply describing results, algorithms, or models via traditional publication pathways, and who want to both make their research findings more accessible, and to help others use their computable knowledge. These rules are roughly organized into 3 categories: planning, engineering, and documentation. Finally, while many of the following examples are of computable knowledge in biomedical domains, these rules are generalizable to computable knowledge in any research domain.<br />Competing Interests: The authors have declared that no competing interests exist.<br /> (Copyright: © 2024 Conte et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)

Details

Language :
English
ISSN :
1553-7358
Volume :
20
Issue :
6
Database :
MEDLINE
Journal :
PLoS computational biology
Publication Type :
Academic Journal
Accession number :
38900708
Full Text :
https://doi.org/10.1371/journal.pcbi.1012179