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Docking carbocations into terpene synthase active sites using chemically meaningful constraints-The TerDockin approach.

Authors :
Torrence IS
O'Brien TE
Siegel JB
Tantillo DJ
Source :
Methods in enzymology [Methods Enzymol] 2024; Vol. 699, pp. 231-263. Date of Electronic Publication: 2024 Apr 16.
Publication Year :
2024

Abstract

Terpenes are a diverse class of natural products which have long been sought after for their chemical properties as medicine, perfumes, and for food flavoring. Computational docking studies of terpene mechanisms have been a challenge due to the lack of strong directing groups which many docking programs rely on. In this chapter, we dive into our computational method Terdockin (Terpene-Docking) as a successful methodology in modeling terpene synthase mechanisms. This method could also be used as inspiration for any multi-ligand docking project.<br /> (Copyright © 2024. Published by Elsevier Inc.)

Details

Language :
English
ISSN :
1557-7988
Volume :
699
Database :
MEDLINE
Journal :
Methods in enzymology
Publication Type :
Academic Journal
Accession number :
38942505
Full Text :
https://doi.org/10.1016/bs.mie.2024.02.006