Discovery of new myositis genetic associations through leveraging other immune-mediated diseases.

Genome-wide association studies (GWASs) have been successful at finding associations between genetic variants and human traits, including the immune-mediated diseases (IMDs). However, the requirement of large sample sizes for discovery poses a challenge for learning about less common diseases, where increasing volunteer numbers might not be feasible. An example of this is myositis (or idiopathic inflammatory myopathies [IIM]s), a group of rare, heterogeneous autoimmune diseases affecting skeletal muscle and other organs, severely impairing life quality. Here, we applied a feature engineering method to borrow information from larger IMD GWASs to find new genetic associations with IIM and its subgroups. Combining this approach with two clustering methods, we found 17 IMDs genetically close to IIM, including some common comorbid conditions, such as systemic sclerosis and Sjögren's syndrome, as well as hypo- and hyperthyroidism. All IIM subtypes were genetically similar within this framework. Next, we colocalized IIM signals that overlapped IMD signals, and found seven potentially novel myositis associations mapped to immune-related genes, including BLK, IRF5/TNPO3, and ITK/HAVCR2, implicating a role for both B and T cells in IIM. This work proposes a new paradigm of genetic discovery in rarer diseases by leveraging information from more common IMD, and can be expanded to other conditions and traits beyond IMD.
Competing Interests: Declaration of interests Dr. Wallace receives research funding from GSK and MSD and is a part-time employee of GSK. Neither company had any influence on this work or its publication. Dr. Radstake is an employee of Abbvie and may hold stock. Abbvie had no influence on the content of this work or its publication. Dr. Chinoy has received fees as a speaker for GSK and UCB; consulting for PTC Therapeutics; advisory board member for Astra Zeneca, Pfizer, Argenx, and Galapagos; and as a data and science monitoring board chair for Horizon Therapeutics. Dr. Maurer has grants from Novartis, consulting fees from Novartis, Boehringer Ingelheim, Jannsen-Cilag, and GSK; speaker fees from Boehringer-Ingelheim, GSK, Novartis, Otsuka, and MSD; congress support from Medtalk, Pfizer, Roche, Actelion, Mepha, and MSD; and has a patent mir-29 for the treatment of SSc (US8247389, EP2331143). Dr. Wedderburn has received speaker and consultancy fees from Pfizer paid to UCL, unrelated to this work.
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