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The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics.

Authors :
Mc Cartney AM
Formenti G
Mouton A
De Panis D
Marins LS
Leitão HG
Diedericks G
Kirangwa J
Morselli M
Salces-Ortiz J
Escudero N
Iannucci A
Natali C
Svardal H
Fernández R
De Pooter T
Joris G
Strazisar M
Wood JMD
Herron KE
Seehausen O
Watts PC
Shaw F
Davey RP
Minotto A
Fernández JM
Böhne A
Alegria C
Alioto T
Alves PC
Amorim IR
Aury JM
Backstrom N
Baldrian P
Baltrunaite L
Barta E
BedHom B
Belser C
Bergsten J
Bertrand L
Bilandija H
Binzer-Panchal M
Bista I
Blaxter M
Borges PAV
Dias GB
Bosse M
Brown T
Bruggmann R
Buena-Atienza E
Burgin J
Buzan E
Cariani A
Casadei N
Chiara M
Chozas S
Čiampor F Jr
Crottini A
Cruaud C
Cruz F
Dalen L
De Biase A
Del Campo J
Delic T
Dennis AB
Derks MFL
Diroma MA
Djan M
Duprat S
Eleftheriadi K
Feulner PGD
Flot JF
Forni G
Fosso B
Fournier P
Fournier-Chambrillon C
Gabaldon T
Garg S
Gissi C
Giupponi L
Gomez-Garrido J
González J
Grilo ML
Grüning B
Guerin T
Guiglielmoni N
Gut M
Haesler MP
Hahn C
Halpern B
Harrison PW
Heintz J
Hindrikson M
Höglund J
Howe K
Hughes GM
Istace B
Cock MJ
Janžekovič F
Jonsson ZO
Joye-Dind S
Koskimäki JJ
Krystufek B
Kubacka J
Kuhl H
Kusza S
Labadie K
Lähteenaro M
Lantz H
Lavrinienko A
Leclère L
Lopes RJ
Madsen O
Magdelenat G
Magoga G
Manousaki T
Mappes T
Marques JP
Redondo GIM
Maumus F
McCarthy SA
Megens HJ
Melo-Ferreira J
Mendes SL
Montagna M
Moreno J
Mosbech MB
Moura M
Musilova Z
Myers E
Nash WJ
Nater A
Nicholson P
Niell M
Nijland R
Noel B
Noren K
Oliveira PH
Olsen RA
Ometto L
Oomen RA
Ossowski S
Palinauskas V
Palsson S
Panibe JP
Pauperio J
Pavlek M
Payen E
Pawlowska J
Pellicer J
Pesole G
Pimenta J
Pippel M
Pirttilä AM
Poulakakis N
Rajan J
M C Rego R
Resendes R
Resl P
Riesgo A
Rodin-Morch P
Soares AER
Fernandes CR
Romeiras MM
Roxo G
Rüber L
Ruiz-Lopez MJ
Saarma U
da Silva LP
Sim-Sim M
Soler L
Sousa VC
Santos CS
Spada A
Stefanovic M
Steger V
Stiller J
Stöck M
Struck TH
Sudasinghe H
Tapanainen R
Tellgren-Roth C
Trindade H
Tukalenko Y
Urso I
Vacherie B
Van Belleghem SM
Van Oers K
Vargas-Chavez C
Velickovic N
Vella N
Vella A
Vernesi C
Vicente S
Villa S
Pettersson OV
Volckaert FAM
Voros J
Wincker P
Winkler S
Ciofi C
Waterhouse RM
Mazzoni CJ
Source :
Npj biodiversity [NPJ Biodivers] 2024 Sep 17; Vol. 3 (1), pp. 28. Date of Electronic Publication: 2024 Sep 17.
Publication Year :
2024

Abstract

A genomic database of all Earth's eukaryotic species could contribute to many scientific discoveries; however, only a tiny fraction of species have genomic information available. In 2018, scientists across the world united under the Earth BioGenome Project (EBP), aiming to produce a database of high-quality reference genomes containing all ~1.5 million recognized eukaryotic species. As the European node of the EBP, the European Reference Genome Atlas (ERGA) sought to implement a new decentralised, equitable and inclusive model for producing reference genomes. For this, ERGA launched a Pilot Project establishing the first distributed reference genome production infrastructure and testing it on 98 eukaryotic species from 33 European countries. Here we outline the infrastructure and explore its effectiveness for scaling high-quality reference genome production, whilst considering equity and inclusion. The outcomes and lessons learned provide a solid foundation for ERGA while offering key learnings to other transnational, national genomic resource projects and the EBP.<br /> (© 2024. The Author(s).)

Details

Language :
English
ISSN :
2731-4243
Volume :
3
Issue :
1
Database :
MEDLINE
Journal :
Npj biodiversity
Publication Type :
Academic Journal
Accession number :
39289538
Full Text :
https://doi.org/10.1038/s44185-024-00054-6