Back to Search
Start Over
Risk factors and molecular characterization of carbapenem resistant Escherichia coli recovered from a tertiary hospital in Fujian, China from 2021 to 2023.
- Source :
-
BMC microbiology [BMC Microbiol] 2024 Sep 28; Vol. 24 (1), pp. 374. Date of Electronic Publication: 2024 Sep 28. - Publication Year :
- 2024
-
Abstract
- Background: There is a serious public health concern regarding the emergence of carbapenem-resistant Escherichia coli (CREC). The purpose of this study is to identify the molecular characterization and risk factors of CREC in Fujian province, China.<br />Methods: A total of 48 CREC isolates were collected from various clinical samples. The strains were identified using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF/MS). Susceptibility to antibiotics was determined by the standard broth microdilution method. Polymerase chain reaction (PCR) was used to screen common drug resistance genes. Multilocus sequence typing (MLST) was used to type isolates. RT-qPCR was used to detect gene expression of acrA, acrB, and tolC. Conjugation assays were used to analyze the transferability of plasmids carrying mcr-1 or bla <subscript>NDM</subscript> . Risk factors for CREC infection were identified by logistic regression analysis.<br />Results: 48 CREC strains were collected, with 81.25% producing carbapenemase (CP-CREC), and 18.75% were not producing carbapenemase (no-CP-CREC). They belonged to 21 sequence type (STs) and five unknown STs. Perianal swabs were the main sample type, with 25 patients found to have hematological malignancies. All isolates of CP-CREC were found to contain bla <subscript>NDM</subscript> (bla <subscript>NDM-5</subscript> (n = 32), bla <subscript>NDM-1</subscript> (n = 5), bla <subscript>NDM-4</subscript> (n = 1), and bla <subscript>NDM-13</subscript> (n = 1)), among which one isolate co-existence bla <subscript>NDM-5</subscript> and bla <subscript>OXA-48</subscript> . Two bla <subscript>NDM</subscript> -positive strains, specifically bla <subscript>NDM-5</subscript> and bla <subscript>NDM-4</subscript> , were found to co-habor mcr-1 with ST617. Conjugation assays confirmed that bla <subscript>NDM-1</subscript> , bla <subscript>NDM-13</subscript> , and most bla <subscript>NDM-5</subscript> (68.75%, 22/32) could be transferred between E. coli strains. Four of the 9 non-CP-CREC isolates had deletions in ompC and ompF with bla <subscript>CTX-M</subscript> production, while the other five showed high expression of acrA, acrB, and tolC. Antibiotics usage, antifungal treatment, detection of other pathogens (prior to CREC infection), and respiratory disease were identified as independent risk factors for CREC infection. The area under the receiver operating characteristic curve for the scoring system was 0.937. Youden's index, with sensitivity and specificity of 0.96 and 0.78, was maximal when 2 points were scored.<br />Conclusions: In CP-CREC, carbapenem resistance is caused primarily by multiple types of bla <subscript>NDM</subscript> , while non-CP-CREC is caused by loss of porin protein or high expression of efflux pumps coupled with carrying bla <subscript>CTX-M</subscript> . CREC isolates were highly diverse in terms of ST, with a total of 21 STs identified. Here, we first describe a clinical strain of CREC from China both mcr-1 and bla <subscript>NDM -4</subscript> with ST617. An easy-to-use scoring system was developed to diagnose CREC infections.<br /> (© 2024. The Author(s).)
- Subjects :
- China epidemiology
Humans
Risk Factors
Male
Female
Middle Aged
Adult
Aged
beta-Lactamases genetics
Bacterial Proteins genetics
Carbapenem-Resistant Enterobacteriaceae genetics
Carbapenem-Resistant Enterobacteriaceae isolation & purification
Carbapenem-Resistant Enterobacteriaceae drug effects
Plasmids genetics
Young Adult
Child
Infant
Child, Preschool
Aged, 80 and over
Adolescent
Escherichia coli Proteins genetics
Tertiary Care Centers statistics & numerical data
Anti-Bacterial Agents pharmacology
Escherichia coli Infections microbiology
Escherichia coli Infections epidemiology
Microbial Sensitivity Tests
Multilocus Sequence Typing
Escherichia coli genetics
Escherichia coli drug effects
Escherichia coli isolation & purification
Carbapenems pharmacology
Subjects
Details
- Language :
- English
- ISSN :
- 1471-2180
- Volume :
- 24
- Issue :
- 1
- Database :
- MEDLINE
- Journal :
- BMC microbiology
- Publication Type :
- Academic Journal
- Accession number :
- 39342086
- Full Text :
- https://doi.org/10.1186/s12866-024-03525-9